{
 "benchmark": "GeneProv",
 "version": "v1.1",
 "frozen": {
  "v0": "2026-10-10",
  "v1": "2026-10-11",
  "v1.1": "2026-10-17"
 },
 "generated": "2026-10-25",
 "universe": 19256,
 "strata": {
  "0-10": 7120,
  "all": 19256,
  "zero": 1262,
  "1-10": 5858,
  "11-100": 8421,
  "101-1000": 3301,
  ">1000": 414
 },
 "labels_T2": [
  "depmap_essential",
  "hpa_loc_nucleoplasm",
  "hpa_loc_cytosol",
  "hpa_loc_plasma_membrane",
  "hpa_loc_vesicles",
  "hpa_loc_mitochondria",
  "hpa_loc_golgi_apparatus",
  "gtex_tissue_specific",
  "hpa_tissue_enriched",
  "clingen_hi",
  "constraint"
 ],
 "index_definition": "mean over T1, T2, T4 of 100*(2*AUROC-1); T3 beside for eligible rows; index4 = mean over the four for eligible rows",
 "T3_reference": {
  "linear": {
   "T3_0-5": 0.7324,
   "T3_all": 0.7996,
   "name": "literature-only 2023 text, MPNet"
  },
  "mlp": {
   "T3_0-5": 0.8774,
   "T3_all": 0.9029,
   "name": "literature-only 2023 text, MPNet"
  }
 },
 "gates": {
  "R-gate": "PASS",
  "I-gate1": "PASS",
  "I-gate2": "PASS",
  "I-gate3": "PASS"
 },
 "robustness": {
  "mean_rank": 0.8465,
  "T2_T4_only": 0.4271,
  "mlp": 0.9564,
  "all_genes": 0.8707
 },
 "weights_spearman": {
  "0": 0.4436,
  "1/4": 0.9805,
  "1/3": 1.0,
  "1/2": 0.9353
 },
 "n_families": 3018,
 "facts": {
  "universe": 19256,
  "generated_summaries": 6172,
  "generated_share": 0.320523,
  "generated_share_0-10": 0.574438,
  "generated_by_bin": {
   "zero": {
    "n": 1262,
    "generated": 702
   },
   "1-10": {
    "n": 5858,
    "generated": 3388
   },
   "11-100": {
    "n": 8421,
    "generated": 1864
   },
   "101-1000": {
    "n": 3301,
    "generated": 212
   },
   ">1000": {
    "n": 414,
    "generated": 6
   }
  },
  "removal_effect_1-10": {
   "linear": {
    "delta": 0.0777,
    "ci": [
     0.0717,
     0.0839
    ],
    "ci_family": [
     0.0705,
     0.0857
    ],
    "n": 4310
   },
   "mlp": {
    "delta": 0.0334,
    "ci": [
     0.0302,
     0.0364
    ],
    "ci_family": [
     0.0298,
     0.0372
    ],
    "n": 4310
   }
  },
  "snapshot": "NCBI Gene, 6 October 2026",
  "n_rows_O_v1": 20,
  "n_rows_O_v11": 6,
  "n_rows_F": 6
 },
 "rows": [
  {
   "track": "O",
   "tag": "protein16b",
   "name": "GB.Protein-16B",
   "short": "GB.Protein-16B",
   "version": "v1",
   "in_v0": true,
   "modality": "protein",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19133,
   "meta": {
    "training": "1.2 trillion amino acids from UniRef90 and ColabFoldDB; masked language modelling",
    "date": "released Nov 2024; database releases not stated",
    "signal": "none (sequences only)",
    "t3": "yes",
    "t3_why": "sequence rule: no functional annotation or text among its inputs",
    "source": "https://huggingface.co/genbio-ai/AIDO.Protein-16B",
    "cite": "Sun et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 45.26,
      "ci": [
       44.51,
       46.04
      ],
      "rank": 4,
      "rank_ci": [
       4,
       4
      ],
      "index4": 47.96,
      "T1": 0.8753,
      "T2": 0.6763,
      "T2_labels": 10,
      "T4": 0.6274,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.7804,
      "T3_n": 137,
      "T3_novel": 0.7429,
      "skills": {
       "T1": 75.06,
       "T2": 35.25,
       "T4": 25.47,
       "T3": 56.07
      },
      "T1_bins": {
       "zero": 0.9508,
       "1-10": 0.8654,
       "11-100": 0.8588,
       "101-1000": 0.8351,
       ">1000": 0.796
      },
      "T2_per_label": {
       "depmap_essential": 0.811,
       "hpa_loc_nucleoplasm": 0.6563,
       "hpa_loc_cytosol": 0.5792,
       "hpa_loc_plasma_membrane": 0.5682,
       "hpa_loc_vesicles": 0.5374,
       "hpa_loc_mitochondria": 0.6974,
       "hpa_loc_golgi_apparatus": 0.5578,
       "gtex_tissue_specific": 0.7916,
       "hpa_tissue_enriched": 0.784,
       "constraint": 0.7797
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       40.05,
       49.9
      ],
      "rank_ci_family": [
       3,
       4
      ],
      "index_r14": 45.26,
      "rank_r14": 4,
      "T4_recall10": 0.0173
     },
     "all": {
      "index": 46.19,
      "ci": [
       45.76,
       46.63
      ],
      "rank": 7,
      "rank_ci": [
       6,
       8
      ],
      "index4": 51.29,
      "T1": 0.8574,
      "T2": 0.7192,
      "T2_labels": 11,
      "T4": 0.6163,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8329,
      "T3_n": 347,
      "T3_novel": 0.7652,
      "skills": {
       "T1": 71.48,
       "T2": 43.83,
       "T4": 23.25,
       "T3": 66.59
      },
      "T2_per_label": {
       "depmap_essential": 0.8461,
       "hpa_loc_nucleoplasm": 0.7236,
       "hpa_loc_cytosol": 0.6231,
       "hpa_loc_plasma_membrane": 0.6915,
       "hpa_loc_vesicles": 0.6071,
       "hpa_loc_mitochondria": 0.7691,
       "hpa_loc_golgi_apparatus": 0.6166,
       "gtex_tissue_specific": 0.8416,
       "hpa_tissue_enriched": 0.8166,
       "clingen_hi": 0.5577,
       "constraint": 0.8178
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0165
     }
    },
    "mlp": {
     "0-10": {
      "index": 54.32,
      "ci": [
       53.67,
       54.94
      ],
      "rank": 2,
      "rank_ci": [
       2,
       3
      ],
      "index4": 61.61,
      "T1": 0.9446,
      "T2": 0.7428,
      "T2_labels": 10,
      "T4": 0.6274,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.9174,
      "T3_n": 137,
      "T3_novel": 0.8949,
      "skills": {
       "T1": 88.92,
       "T2": 48.56,
       "T4": 25.47,
       "T3": 83.49
      },
      "T1_bins": {
       "zero": 0.9786,
       "1-10": 0.9401,
       "11-100": 0.9261,
       "101-1000": 0.9034,
       ">1000": 0.8735
      },
      "T2_per_label": {
       "depmap_essential": 0.9422,
       "hpa_loc_nucleoplasm": 0.6363,
       "hpa_loc_cytosol": 0.6342,
       "hpa_loc_plasma_membrane": 0.6665,
       "hpa_loc_vesicles": 0.6248,
       "hpa_loc_mitochondria": 0.7579,
       "hpa_loc_golgi_apparatus": 0.6457,
       "gtex_tissue_specific": 0.8418,
       "hpa_tissue_enriched": 0.8117,
       "constraint": 0.8668
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0173
     },
     "all": {
      "index": 53.64,
      "ci": [
       53.25,
       54.06
      ],
      "rank": 5,
      "rank_ci": [
       4,
       6
      ],
      "index4": 61.63,
      "T1": 0.9258,
      "T2": 0.7626,
      "T2_labels": 11,
      "T4": 0.6163,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.928,
      "T3_n": 347,
      "T3_novel": 0.8936,
      "skills": {
       "T1": 85.15,
       "T2": 52.52,
       "T4": 23.25,
       "T3": 85.6
      },
      "T2_per_label": {
       "depmap_essential": 0.9407,
       "hpa_loc_nucleoplasm": 0.7265,
       "hpa_loc_cytosol": 0.648,
       "hpa_loc_plasma_membrane": 0.7457,
       "hpa_loc_vesicles": 0.6603,
       "hpa_loc_mitochondria": 0.8152,
       "hpa_loc_golgi_apparatus": 0.6689,
       "gtex_tissue_specific": 0.8732,
       "hpa_tissue_enriched": 0.8363,
       "clingen_hi": 0.6033,
       "constraint": 0.8704
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0165
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "esm2_650m",
   "name": "ESM2-650M",
   "short": "ESM2-650M",
   "version": "v1",
   "in_v0": true,
   "modality": "protein",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19133,
   "meta": {
    "training": "UniRef50 clusters sampled from UniRef90 (UniRef release 2021_04), masked language modelling",
    "date": "2021",
    "signal": "none",
    "t3": "yes",
    "t3_why": "sequence rule",
    "source": "https://huggingface.co/facebook/esm2_t33_650M_UR50D",
    "cite": "Lin et al., 2023"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 44.42,
      "ci": [
       43.66,
       45.12
      ],
      "rank": 5,
      "rank_ci": [
       5,
       6
      ],
      "index4": 47.17,
      "T1": 0.8792,
      "T2": 0.6905,
      "T2_labels": 10,
      "T4": 0.5967,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.7771,
      "T3_n": 137,
      "T3_novel": 0.7424,
      "skills": {
       "T1": 75.83,
       "T2": 38.1,
       "T4": 19.33,
       "T3": 55.42
      },
      "T1_bins": {
       "zero": 0.9595,
       "1-10": 0.8686,
       "11-100": 0.8604,
       "101-1000": 0.8381,
       ">1000": 0.8053
      },
      "T2_per_label": {
       "depmap_essential": 0.8412,
       "hpa_loc_nucleoplasm": 0.6728,
       "hpa_loc_cytosol": 0.5826,
       "hpa_loc_plasma_membrane": 0.6136,
       "hpa_loc_vesicles": 0.5814,
       "hpa_loc_mitochondria": 0.7103,
       "hpa_loc_golgi_apparatus": 0.5658,
       "gtex_tissue_specific": 0.7844,
       "hpa_tissue_enriched": 0.7858,
       "constraint": 0.7669
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       38.93,
       47.97
      ],
      "rank_ci_family": [
       5,
       8
      ],
      "index_r14": 43.65,
      "rank_r14": 6,
      "T4_recall10": 0.015
     },
     "all": {
      "index": 44.94,
      "ci": [
       44.48,
       45.37
      ],
      "rank": 9,
      "rank_ci": [
       9,
       10
      ],
      "index4": 50.66,
      "T1": 0.8601,
      "T2": 0.7288,
      "T2_labels": 11,
      "T4": 0.5851,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8391,
      "T3_n": 347,
      "T3_novel": 0.7698,
      "skills": {
       "T1": 72.03,
       "T2": 45.75,
       "T4": 17.03,
       "T3": 67.82
      },
      "T2_per_label": {
       "depmap_essential": 0.864,
       "hpa_loc_nucleoplasm": 0.7411,
       "hpa_loc_cytosol": 0.6426,
       "hpa_loc_plasma_membrane": 0.718,
       "hpa_loc_vesicles": 0.6467,
       "hpa_loc_mitochondria": 0.7825,
       "hpa_loc_golgi_apparatus": 0.6229,
       "gtex_tissue_specific": 0.8264,
       "hpa_tissue_enriched": 0.8083,
       "clingen_hi": 0.5572,
       "constraint": 0.794
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0129
     }
    },
    "mlp": {
     "0-10": {
      "index": 52.15,
      "ci": [
       51.51,
       52.79
      ],
      "rank": 5,
      "rank_ci": [
       5,
       7
      ],
      "index4": 59.82,
      "T1": 0.9465,
      "T2": 0.7391,
      "T2_labels": 10,
      "T4": 0.5967,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.9142,
      "T3_n": 137,
      "T3_novel": 0.8947,
      "skills": {
       "T1": 89.3,
       "T2": 47.82,
       "T4": 19.33,
       "T3": 82.85
      },
      "T1_bins": {
       "zero": 0.9816,
       "1-10": 0.9419,
       "11-100": 0.9291,
       "101-1000": 0.9092,
       ">1000": 0.8779
      },
      "T2_per_label": {
       "depmap_essential": 0.924,
       "hpa_loc_nucleoplasm": 0.6642,
       "hpa_loc_cytosol": 0.6028,
       "hpa_loc_plasma_membrane": 0.6628,
       "hpa_loc_vesicles": 0.6305,
       "hpa_loc_mitochondria": 0.7611,
       "hpa_loc_golgi_apparatus": 0.6451,
       "gtex_tissue_specific": 0.8014,
       "hpa_tissue_enriched": 0.8156,
       "constraint": 0.8328
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.015
     },
     "all": {
      "index": 51.39,
      "ci": [
       50.99,
       51.76
      ],
      "rank": 11,
      "rank_ci": [
       10,
       11
      ],
      "index4": 60.05,
      "T1": 0.929,
      "T2": 0.7567,
      "T2_labels": 11,
      "T4": 0.5851,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.9301,
      "T3_n": 347,
      "T3_novel": 0.8972,
      "skills": {
       "T1": 85.8,
       "T2": 51.33,
       "T4": 17.03,
       "T3": 86.02
      },
      "T2_per_label": {
       "depmap_essential": 0.9183,
       "hpa_loc_nucleoplasm": 0.7293,
       "hpa_loc_cytosol": 0.633,
       "hpa_loc_plasma_membrane": 0.7368,
       "hpa_loc_vesicles": 0.6601,
       "hpa_loc_mitochondria": 0.8053,
       "hpa_loc_golgi_apparatus": 0.6688,
       "gtex_tissue_specific": 0.8381,
       "hpa_tissue_enriched": 0.8154,
       "clingen_hi": 0.5715,
       "constraint": 0.8224
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0129
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "cell_base",
   "name": "GB.Cell-100M",
   "short": "GB.Cell-100M",
   "version": "v1",
   "in_v0": true,
   "modality": "single-cell",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 18593,
   "meta": {
    "training": "50 million single-cell transcriptomes from over 100 tissue types, read-depth-aware masked modelling",
    "date": "released Nov 2024",
    "signal": "none (expression counts)",
    "t3": "yes",
    "t3_why": "expression rule",
    "source": "https://huggingface.co/genbio-ai/AIDO.Cell-100M",
    "cite": "Ho et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 34.7,
      "ci": [
       33.91,
       35.47
      ],
      "rank": 17,
      "rank_ci": [
       16,
       18
      ],
      "index4": 34.98,
      "T1": 0.7079,
      "T2": 0.7327,
      "T2_labels": 10,
      "T4": 0.5798,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.6791,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 41.59,
       "T2": 46.54,
       "T4": 15.96,
       "T3": 35.82
      },
      "T1_bins": {
       "zero": 0.7733,
       "1-10": 0.6993,
       "11-100": 0.7341,
       "101-1000": 0.7483,
       ">1000": 0.7396
      },
      "ci_family": [
       32.81,
       36.97
      ],
      "rank_ci_family": [
       15,
       18
      ],
      "index_r14": 34.7,
      "rank_r14": 17,
      "T4_recall10": 0.0052
     },
     "all": {
      "index": 37.62,
      "ci": [
       37.18,
       38.05
      ],
      "rank": 18,
      "rank_ci": [
       17,
       18
      ],
      "index4": 39.14,
      "T1": 0.7294,
      "T2": 0.7567,
      "T2_labels": 11,
      "T4": 0.5781,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.7185,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 45.88,
       "T2": 51.35,
       "T4": 15.62,
       "T3": 43.7
      },
      "T4_recall10": 0.0078
     }
    },
    "mlp": {
     "0-10": {
      "index": 44.85,
      "ci": [
       44.24,
       45.5
      ],
      "rank": 16,
      "rank_ci": [
       16,
       17
      ],
      "index4": 51.5,
      "T1": 0.8659,
      "T2": 0.727,
      "T2_labels": 10,
      "T4": 0.5798,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8573,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 73.18,
       "T2": 45.41,
       "T4": 15.96,
       "T3": 71.46
      },
      "T1_bins": {
       "zero": 0.9204,
       "1-10": 0.8587,
       "11-100": 0.8528,
       "101-1000": 0.8422,
       ">1000": 0.8188
      },
      "T4_recall10": 0.0052
     },
     "all": {
      "index": 45.61,
      "ci": [
       45.21,
       45.99
      ],
      "rank": 17,
      "rank_ci": [
       16,
       18
      ],
      "index4": 51.6,
      "T1": 0.8537,
      "T2": 0.7523,
      "T2_labels": 11,
      "T4": 0.5781,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8479,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 70.74,
       "T2": 50.46,
       "T4": 15.62,
       "T3": 69.59
      },
      "T4_recall10": 0.0078
     }
    }
   },
   "coverage": {
    "n_present": 18593,
    "share_missing": 0.0344,
    "missing_by_bin": {
     "zero": 295,
     "1-10": 277,
     "11-100": 71,
     "101-1000": 19,
     ">1000": 1
    }
   }
  },
  {
   "track": "O",
   "tag": "geneformer",
   "name": "Geneformer V2-316M",
   "short": "Geneformer V2-316M",
   "version": "v1",
   "in_v0": true,
   "modality": "single-cell",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19229,
   "meta": {
    "training": "about 104 million human single-cell transcriptomes (Genecorpus-104M), rank-value encoding",
    "date": "trained Dec 2024",
    "signal": "none",
    "t3": "yes",
    "t3_why": "expression rule",
    "source": "https://huggingface.co/ctheodoris/Geneformer",
    "cite": "Chen et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 36.59,
      "ci": [
       35.75,
       37.34
      ],
      "rank": 14,
      "rank_ci": [
       14,
       15
      ],
      "index4": 35.76,
      "T1": 0.7275,
      "T2": 0.7333,
      "T2_labels": 10,
      "T4": 0.5879,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.6664,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 45.51,
       "T2": 46.67,
       "T4": 17.59,
       "T3": 33.28
      },
      "T1_bins": {
       "zero": 0.819,
       "1-10": 0.7155,
       "11-100": 0.7307,
       "101-1000": 0.7388,
       ">1000": 0.7106
      },
      "ci_family": [
       34.31,
       39.21
      ],
      "rank_ci_family": [
       13,
       16
      ],
      "index_r14": 36.59,
      "rank_r14": 14,
      "T4_recall10": 0.0038
     },
     "all": {
      "index": 37.73,
      "ci": [
       37.29,
       38.14
      ],
      "rank": 17,
      "rank_ci": [
       17,
       18
      ],
      "index4": 37.79,
      "T1": 0.7309,
      "T2": 0.7455,
      "T2_labels": 11,
      "T4": 0.5896,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.6898,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 46.17,
       "T2": 49.11,
       "T4": 17.91,
       "T3": 37.97
      },
      "T4_recall10": 0.0042
     }
    },
    "mlp": {
     "0-10": {
      "index": 45.94,
      "ci": [
       45.27,
       46.58
      ],
      "rank": 14,
      "rank_ci": [
       14,
       15
      ],
      "index4": 52.16,
      "T1": 0.8636,
      "T2": 0.7375,
      "T2_labels": 10,
      "T4": 0.5879,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8541,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 72.73,
       "T2": 47.5,
       "T4": 17.59,
       "T3": 70.82
      },
      "T1_bins": {
       "zero": 0.9353,
       "1-10": 0.8542,
       "11-100": 0.8387,
       "101-1000": 0.8274,
       ">1000": 0.7929
      },
      "T4_recall10": 0.0038
     },
     "all": {
      "index": 45.37,
      "ci": [
       44.98,
       45.77
      ],
      "rank": 18,
      "rank_ci": [
       17,
       18
      ],
      "index4": 51.37,
      "T1": 0.8426,
      "T2": 0.7484,
      "T2_labels": 11,
      "T4": 0.5896,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8468,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 68.52,
       "T2": 49.69,
       "T4": 17.91,
       "T3": 69.37
      },
      "T4_recall10": 0.0042
     }
    }
   },
   "coverage": {
    "n_present": 19229,
    "share_missing": 0.0014,
    "missing_by_bin": {
     "zero": 4,
     "1-10": 11,
     "11-100": 10,
     "101-1000": 2,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "genept_ada",
   "name": "GenePT ada-002 (NCBI text, as released)",
   "short": "GenePT ada-002",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "gen",
   "text": "genept",
   "train_text": null,
   "encoder": "text-embedding-ada-002",
   "text_label": "31% of the embedded genes carry a GO-generated summary",
   "gen_share": 0.3089,
   "n_genes": 18942,
   "meta": {
    "training": "NCBI Gene summaries (October 2023 snapshot) embedded with OpenAI text-embedding-ada-002",
    "date": "text Oct 2023; encoder 2022",
    "signal": "31% of the embedded summaries are generated from GO",
    "t3": "yes",
    "t3_why": "admitted under the tag-date proxy; a pre-2023 tag is not a verified pre-cutoff text snapshot",
    "source": "https://github.com/yiqunchen/GenePT",
    "cite": "Chen et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 41.44,
      "ci": [
       40.66,
       42.19
      ],
      "rank": 11,
      "rank_ci": [
       10,
       11
      ],
      "index4": 41.09,
      "T1": 0.8992,
      "T2": 0.6606,
      "T2_labels": 10,
      "T4": 0.5618,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.7001,
      "T3_n": 137,
      "T3_novel": 0.6409,
      "skills": {
       "T1": 79.84,
       "T2": 32.12,
       "T4": 12.37,
       "T3": 40.02
      },
      "T1_bins": {
       "zero": 0.9435,
       "1-10": 0.8933,
       "11-100": 0.8678,
       "101-1000": 0.847,
       ">1000": 0.8245
      },
      "T2_per_label": {
       "depmap_essential": 0.8214,
       "hpa_loc_nucleoplasm": 0.6571,
       "hpa_loc_cytosol": 0.5631,
       "hpa_loc_plasma_membrane": 0.6266,
       "hpa_loc_vesicles": 0.5822,
       "hpa_loc_mitochondria": 0.6968,
       "hpa_loc_golgi_apparatus": 0.5979,
       "gtex_tissue_specific": 0.7232,
       "hpa_tissue_enriched": 0.6971,
       "constraint": 0.641
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       37.89,
       44.88
      ],
      "rank_ci_family": [
       9,
       12
      ],
      "index_r14": 41.44,
      "rank_r14": 11,
      "T4_recall10": 0.0167
     },
     "all": {
      "index": 42.54,
      "ci": [
       42.08,
       43.02
      ],
      "rank": 12,
      "rank_ci": [
       12,
       13
      ],
      "index4": 46.11,
      "T1": 0.8718,
      "T2": 0.701,
      "T2_labels": 11,
      "T4": 0.5653,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.784,
      "T3_n": 347,
      "T3_novel": 0.7059,
      "skills": {
       "T1": 74.36,
       "T2": 40.21,
       "T4": 13.05,
       "T3": 56.8
      },
      "T2_per_label": {
       "depmap_essential": 0.8267,
       "hpa_loc_nucleoplasm": 0.7109,
       "hpa_loc_cytosol": 0.6012,
       "hpa_loc_plasma_membrane": 0.6962,
       "hpa_loc_vesicles": 0.6197,
       "hpa_loc_mitochondria": 0.7589,
       "hpa_loc_golgi_apparatus": 0.6436,
       "gtex_tissue_specific": 0.792,
       "hpa_tissue_enriched": 0.7633,
       "clingen_hi": 0.5995,
       "constraint": 0.6995
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0217
     }
    },
    "mlp": {
     "0-10": {
      "index": 47.31,
      "ci": [
       46.58,
       48.0
      ],
      "rank": 12,
      "rank_ci": [
       11,
       13
      ],
      "index4": 55.76,
      "T1": 0.9536,
      "T2": 0.6943,
      "T2_labels": 10,
      "T4": 0.5618,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.9054,
      "T3_n": 137,
      "T3_novel": 0.8795,
      "skills": {
       "T1": 90.71,
       "T2": 38.86,
       "T4": 12.37,
       "T3": 81.09
      },
      "T1_bins": {
       "zero": 0.9775,
       "1-10": 0.9504,
       "11-100": 0.9272,
       "101-1000": 0.9019,
       ">1000": 0.8705
      },
      "T2_per_label": {
       "depmap_essential": 0.8893,
       "hpa_loc_nucleoplasm": 0.6267,
       "hpa_loc_cytosol": 0.5631,
       "hpa_loc_plasma_membrane": 0.6774,
       "hpa_loc_vesicles": 0.6378,
       "hpa_loc_mitochondria": 0.7201,
       "hpa_loc_golgi_apparatus": 0.654,
       "gtex_tissue_specific": 0.7635,
       "hpa_tissue_enriched": 0.7638,
       "constraint": 0.6471
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0167
     },
     "all": {
      "index": 47.9,
      "ci": [
       47.49,
       48.31
      ],
      "rank": 15,
      "rank_ci": [
       15,
       15
      ],
      "index4": 56.72,
      "T1": 0.9285,
      "T2": 0.7246,
      "T2_labels": 11,
      "T4": 0.5653,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.9159,
      "T3_n": 347,
      "T3_novel": 0.8831,
      "skills": {
       "T1": 85.71,
       "T2": 44.93,
       "T4": 13.05,
       "T3": 83.18
      },
      "T2_per_label": {
       "depmap_essential": 0.8802,
       "hpa_loc_nucleoplasm": 0.6965,
       "hpa_loc_cytosol": 0.6113,
       "hpa_loc_plasma_membrane": 0.7258,
       "hpa_loc_vesicles": 0.6535,
       "hpa_loc_mitochondria": 0.7852,
       "hpa_loc_golgi_apparatus": 0.6765,
       "gtex_tissue_specific": 0.8065,
       "hpa_tissue_enriched": 0.786,
       "clingen_hi": 0.6372,
       "constraint": 0.7123
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0217
     }
    }
   },
   "coverage": {
    "n_present": 18942,
    "share_missing": 0.0163,
    "missing_by_bin": {
     "zero": 85,
     "1-10": 168,
     "11-100": 46,
     "101-1000": 13,
     ">1000": 2
    }
   }
  },
  {
   "track": "O",
   "tag": "genept_3large",
   "name": "GenePT text-embedding-3-large (as released)",
   "short": "GenePT 3-large",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "gen",
   "text": "genept",
   "train_text": null,
   "encoder": "text-embedding-3-large",
   "text_label": "31% of the embedded genes carry a GO-generated summary",
   "gen_share": 0.3088,
   "n_genes": 18945,
   "meta": {
    "training": "the same NCBI text plus UniProt summaries, text-embedding-3-large",
    "date": "text 2024; encoder 2024",
    "signal": "generated summaries and UniProt text",
    "t3": "no",
    "t3_why": "text and encoder after the cutoff",
    "source": "https://github.com/yiqunchen/GenePT",
    "cite": "Chen et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 43.04,
      "ci": [
       42.28,
       43.76
      ],
      "rank": 7,
      "rank_ci": [
       7,
       9
      ],
      "index4": null,
      "T1": 0.9187,
      "T2": 0.6557,
      "T2_labels": 10,
      "T4": 0.5713,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.74,
       "T2": 31.13,
       "T4": 14.26,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9457,
       "1-10": 0.9151,
       "11-100": 0.8985,
       "101-1000": 0.8711,
       ">1000": 0.8538
      },
      "ci_family": [
       38.6,
       46.9
      ],
      "rank_ci_family": [
       5,
       9
      ],
      "index_r14": 43.04,
      "rank_r14": 7,
      "T4_recall10": 0.0192
     },
     "all": {
      "index": 46.01,
      "ci": [
       45.55,
       46.46
      ],
      "rank": 8,
      "rank_ci": [
       7,
       8
      ],
      "index4": null,
      "T1": 0.8979,
      "T2": 0.7126,
      "T2_labels": 11,
      "T4": 0.5796,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 79.58,
       "T2": 42.52,
       "T4": 15.91,
       "T3": null
      },
      "T4_recall10": 0.0269
     }
    },
    "mlp": {
     "0-10": {
      "index": 50.87,
      "ci": [
       50.23,
       51.56
      ],
      "rank": 9,
      "rank_ci": [
       9,
       9
      ],
      "index4": null,
      "T1": 0.9641,
      "T2": 0.7277,
      "T2_labels": 10,
      "T4": 0.5713,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 92.82,
       "T2": 45.55,
       "T4": 14.26,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9803,
       "1-10": 0.9619,
       "11-100": 0.9428,
       "101-1000": 0.9159,
       ">1000": 0.8867
      },
      "T4_recall10": 0.0192
     },
     "all": {
      "index": 52.57,
      "ci": [
       52.14,
       52.98
      ],
      "rank": 7,
      "rank_ci": [
       7,
       8
      ],
      "index4": null,
      "T1": 0.9423,
      "T2": 0.7666,
      "T2_labels": 11,
      "T4": 0.5796,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 88.47,
       "T2": 53.32,
       "T4": 15.91,
       "T3": null
      },
      "T4_recall10": 0.0269
     }
    }
   },
   "coverage": {
    "n_present": 18945,
    "share_missing": 0.0162,
    "missing_by_bin": {
     "zero": 85,
     "1-10": 166,
     "11-100": 45,
     "101-1000": 13,
     ">1000": 2
    }
   }
  },
  {
   "track": "O",
   "tag": "scelmo_gpt35",
   "name": "scELMo (GPT-3.5-written descriptions)",
   "short": "scELMo (GPT-3.5 text)",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "llm",
   "train_text": null,
   "encoder": "text-embedding-ada-002",
   "text_label": "LLM-written descriptions; no NCBI or UniProt text",
   "gen_share": 0.0,
   "n_genes": 19231,
   "meta": {
    "training": "descriptions written by GPT-3.5 from its own memory, embedded with ada-002",
    "date": "GPT-3.5 training data to 2021",
    "signal": "LLM memory of the literature and databases",
    "t3": "yes",
    "t3_why": "admitted under the reported pre-2022 training-data assumption; not a verified historical corpus",
    "source": "https://github.com/HelloWorldLTY/scELMo",
    "cite": "Liu et al., 2023"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 36.08,
      "ci": [
       35.23,
       36.95
      ],
      "rank": 15,
      "rank_ci": [
       14,
       16
      ],
      "index4": 38.72,
      "T1": 0.8393,
      "T2": 0.6428,
      "T2_labels": 10,
      "T4": 0.5591,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.7332,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 67.87,
       "T2": 28.56,
       "T4": 11.81,
       "T3": 46.64
      },
      "T1_bins": {
       "zero": 0.9274,
       "1-10": 0.8277,
       "11-100": 0.8618,
       "101-1000": 0.8633,
       ">1000": 0.8468
      },
      "ci_family": [
       32.62,
       39.65
      ],
      "rank_ci_family": [
       14,
       16
      ],
      "index_r14": 36.08,
      "rank_r14": 15,
      "T4_recall10": 0.0165
     },
     "all": {
      "index": 42.28,
      "ci": [
       41.79,
       42.72
      ],
      "rank": 13,
      "rank_ci": [
       12,
       13
      ],
      "index4": 47.57,
      "T1": 0.8552,
      "T2": 0.7072,
      "T2_labels": 11,
      "T4": 0.5718,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8172,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 71.03,
       "T2": 41.45,
       "T4": 14.36,
       "T3": 63.44
      },
      "T4_recall10": 0.0238
     }
    },
    "mlp": {
     "0-10": {
      "index": 44.76,
      "ci": [
       44.02,
       45.51
      ],
      "rank": 17,
      "rank_ci": [
       16,
       17
      ],
      "index4": 53.56,
      "T1": 0.9322,
      "T2": 0.6802,
      "T2_labels": 10,
      "T4": 0.5591,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8998,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 86.44,
       "T2": 36.04,
       "T4": 11.81,
       "T3": 79.96
      },
      "T1_bins": {
       "zero": 0.9746,
       "1-10": 0.9266,
       "11-100": 0.9292,
       "101-1000": 0.9142,
       ">1000": 0.8865
      },
      "T4_recall10": 0.0165
     },
     "all": {
      "index": 48.58,
      "ci": [
       48.15,
       48.98
      ],
      "rank": 13,
      "rank_ci": [
       12,
       14
      ],
      "index4": 57.61,
      "T1": 0.9261,
      "T2": 0.7308,
      "T2_labels": 11,
      "T4": 0.5718,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.9235,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 85.22,
       "T2": 46.16,
       "T4": 14.36,
       "T3": 84.7
      },
      "T4_recall10": 0.0238
     }
    }
   },
   "coverage": {
    "n_present": 19231,
    "share_missing": 0.0013,
    "missing_by_bin": {
     "zero": 10,
     "1-10": 13,
     "11-100": 2,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "llm_qwen25",
   "name": "Qwen2.5-7B-written descriptions",
   "short": "Qwen2.5-written text",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "llm",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "LLM-written descriptions; no NCBI or UniProt text",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "descriptions written by Qwen2.5-7B-Instruct, embedded with Qwen3-Embedding-8B",
    "date": "LLM 2024; encoder 2025",
    "signal": "LLM memory",
    "t3": "no",
    "t3_why": "LLM and encoder after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen2.5-7B-Instruct",
    "cite": "Qwen, 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 31.19,
      "ci": [
       30.35,
       32.05
      ],
      "rank": 19,
      "rank_ci": [
       19,
       20
      ],
      "index4": null,
      "T1": 0.8188,
      "T2": 0.5997,
      "T2_labels": 10,
      "T4": 0.5493,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 63.77,
       "T2": 19.94,
       "T4": 9.87,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9366,
       "1-10": 0.8033,
       "11-100": 0.8136,
       "101-1000": 0.8357,
       ">1000": 0.8412
      },
      "ci_family": [
       27.52,
       34.84
      ],
      "rank_ci_family": [
       19,
       20
      ],
      "index_r14": 31.19,
      "rank_r14": 19,
      "T4_recall10": 0.0164
     },
     "all": {
      "index": 35.74,
      "ci": [
       35.25,
       36.21
      ],
      "rank": 19,
      "rank_ci": [
       19,
       19
      ],
      "index4": null,
      "T1": 0.8202,
      "T2": 0.6585,
      "T2_labels": 11,
      "T4": 0.5574,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 64.03,
       "T2": 31.7,
       "T4": 11.47,
       "T3": null
      },
      "T4_recall10": 0.0208
     }
    },
    "mlp": {
     "0-10": {
      "index": 40.36,
      "ci": [
       39.59,
       41.09
      ],
      "rank": 19,
      "rank_ci": [
       19,
       19
      ],
      "index4": null,
      "T1": 0.9063,
      "T2": 0.6498,
      "T2_labels": 10,
      "T4": 0.5493,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 81.26,
       "T2": 29.95,
       "T4": 9.87,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.971,
       "1-10": 0.8978,
       "11-100": 0.8896,
       "101-1000": 0.8858,
       ">1000": 0.8686
      },
      "T4_recall10": 0.0164
     },
     "all": {
      "index": 44.04,
      "ci": [
       43.59,
       44.48
      ],
      "rank": 19,
      "rank_ci": [
       19,
       19
      ],
      "index4": null,
      "T1": 0.8932,
      "T2": 0.71,
      "T2_labels": 11,
      "T4": 0.5574,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 78.64,
       "T2": 42.01,
       "T4": 11.47,
       "T3": null
      },
      "T4_recall10": 0.0208
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "text_refseq",
   "name": "Rich summary-filtered text",
   "short": "Rich summary-filtered text",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Summary-filtered text (generated summaries removed); includes UniProt function text",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "NCBI RefSeq summaries and UniProt function text of October 2026, embedded with Qwen3-Embedding-8B",
    "date": "text 2026; encoder 2025",
    "signal": "UniProt text (co-curated); encoder memory may hold NCBI pages newer than the cutoff",
    "t3": "no",
    "t3_why": "text after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 42.81,
      "ci": [
       42.01,
       43.59
      ],
      "rank": 8,
      "rank_ci": [
       7,
       9
      ],
      "index4": null,
      "T1": 0.9153,
      "T2": 0.6509,
      "T2_labels": 10,
      "T4": 0.5759,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.06,
       "T2": 30.18,
       "T4": 15.19,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9411,
       "1-10": 0.9119,
       "11-100": 0.9126,
       "101-1000": 0.8905,
       ">1000": 0.8653
      },
      "T2_per_label": {
       "depmap_essential": 0.819,
       "hpa_loc_nucleoplasm": 0.6353,
       "hpa_loc_cytosol": 0.5329,
       "hpa_loc_plasma_membrane": 0.5812,
       "hpa_loc_vesicles": 0.5254,
       "hpa_loc_mitochondria": 0.692,
       "hpa_loc_golgi_apparatus": 0.5581,
       "gtex_tissue_specific": 0.7707,
       "hpa_tissue_enriched": 0.7726,
       "constraint": 0.622
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       38.73,
       46.4
      ],
      "rank_ci_family": [
       6,
       9
      ],
      "index_r14": 42.81,
      "rank_r14": 8,
      "T4_recall10": 0.0203
     },
     "all": {
      "index": 47.81,
      "ci": [
       47.39,
       48.26
      ],
      "rank": 4,
      "rank_ci": [
       3,
       4
      ],
      "index4": null,
      "T1": 0.9079,
      "T2": 0.7221,
      "T2_labels": 11,
      "T4": 0.5872,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 81.58,
       "T2": 44.42,
       "T4": 17.43,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.864,
       "hpa_loc_nucleoplasm": 0.6998,
       "hpa_loc_cytosol": 0.6046,
       "hpa_loc_plasma_membrane": 0.6801,
       "hpa_loc_vesicles": 0.6089,
       "hpa_loc_mitochondria": 0.7757,
       "hpa_loc_golgi_apparatus": 0.6225,
       "gtex_tissue_specific": 0.8404,
       "hpa_tissue_enriched": 0.8229,
       "clingen_hi": 0.7111,
       "constraint": 0.7133
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0306
     }
    },
    "mlp": {
     "0-10": {
      "index": 52.14,
      "ci": [
       51.45,
       52.84
      ],
      "rank": 6,
      "rank_ci": [
       5,
       7
      ],
      "index4": null,
      "T1": 0.9674,
      "T2": 0.7388,
      "T2_labels": 10,
      "T4": 0.5759,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 93.47,
       "T2": 47.76,
       "T4": 15.19,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9822,
       "1-10": 0.9654,
       "11-100": 0.952,
       "101-1000": 0.9263,
       ">1000": 0.8944
      },
      "T2_per_label": {
       "depmap_essential": 0.9346,
       "hpa_loc_nucleoplasm": 0.6668,
       "hpa_loc_cytosol": 0.6199,
       "hpa_loc_plasma_membrane": 0.6923,
       "hpa_loc_vesicles": 0.6459,
       "hpa_loc_mitochondria": 0.7669,
       "hpa_loc_golgi_apparatus": 0.7039,
       "gtex_tissue_specific": 0.8333,
       "hpa_tissue_enriched": 0.8348,
       "constraint": 0.6899
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0203
     },
     "all": {
      "index": 55.12,
      "ci": [
       54.72,
       55.51
      ],
      "rank": 2,
      "rank_ci": [
       2,
       2
      ],
      "index4": null,
      "T1": 0.95,
      "T2": 0.7896,
      "T2_labels": 11,
      "T4": 0.5872,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 90.0,
       "T2": 57.91,
       "T4": 17.43,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9568,
       "hpa_loc_nucleoplasm": 0.7492,
       "hpa_loc_cytosol": 0.665,
       "hpa_loc_plasma_membrane": 0.7755,
       "hpa_loc_vesicles": 0.7003,
       "hpa_loc_mitochondria": 0.8431,
       "hpa_loc_golgi_apparatus": 0.7432,
       "gtex_tissue_specific": 0.885,
       "hpa_tissue_enriched": 0.8689,
       "clingen_hi": 0.7252,
       "constraint": 0.773
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0306
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "text_refseq_nomenfree",
   "name": "Rich summary-filtered text, names masked",
   "short": "Summary-filtered, names masked",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Summary-filtered text (generated summaries removed); includes UniProt function text",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "NCBI RefSeq summaries and UniProt function text of October 2026, embedded with Qwen3-Embedding-8B; gene names and symbols masked",
    "date": "text 2026; encoder 2025",
    "signal": "UniProt text (co-curated)",
    "t3": "no",
    "t3_why": "text after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 39.22,
      "ci": [
       38.36,
       40.11
      ],
      "rank": 13,
      "rank_ci": [
       12,
       13
      ],
      "index4": null,
      "T1": 0.8588,
      "T2": 0.6549,
      "T2_labels": 10,
      "T4": 0.5746,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 71.76,
       "T2": 30.99,
       "T4": 14.91,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.8136,
       "1-10": 0.8647,
       "11-100": 0.9067,
       "101-1000": 0.8857,
       ">1000": 0.864
      },
      "ci_family": [
       36.08,
       42.37
      ],
      "rank_ci_family": [
       12,
       13
      ],
      "index_r14": 39.22,
      "rank_r14": 13,
      "T4_recall10": 0.017
     },
     "all": {
      "index": 46.9,
      "ci": [
       46.47,
       47.31
      ],
      "rank": 5,
      "rank_ci": [
       5,
       6
      ],
      "index4": null,
      "T1": 0.8875,
      "T2": 0.7292,
      "T2_labels": 11,
      "T4": 0.5867,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 77.51,
       "T2": 45.84,
       "T4": 17.34,
       "T3": null
      },
      "T4_recall10": 0.0294
     }
    },
    "mlp": {
     "0-10": {
      "index": 47.88,
      "ci": [
       47.11,
       48.59
      ],
      "rank": 11,
      "rank_ci": [
       11,
       12
      ],
      "index4": null,
      "T1": 0.9461,
      "T2": 0.6975,
      "T2_labels": 10,
      "T4": 0.5746,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 89.21,
       "T2": 39.5,
       "T4": 14.91,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.93,
       "1-10": 0.9482,
       "11-100": 0.9502,
       "101-1000": 0.9261,
       ">1000": 0.8922
      },
      "T4_recall10": 0.017
     },
     "all": {
      "index": 53.51,
      "ci": [
       53.1,
       53.93
      ],
      "rank": 6,
      "rank_ci": [
       5,
       6
      ],
      "index4": null,
      "T1": 0.9428,
      "T2": 0.7732,
      "T2_labels": 11,
      "T4": 0.5867,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 88.57,
       "T2": 54.63,
       "T4": 17.34,
       "T3": null
      },
      "T4_recall10": 0.0294
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "t23a__qwen8b",
   "name": "GenePT text as found",
   "short": "GenePT text as found",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "gen",
   "text": "genept",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "30% of the embedded genes carry a GO-generated summary",
   "gen_share": 0.3039,
   "n_genes": 19256,
   "meta": {
    "training": "GenePT's October-2023 NCBI text as released, re-encoded with Qwen3-Embedding-8B",
    "date": "text Oct 2023; encoder 2025",
    "signal": "generated summaries (as found)",
    "t3": "no",
    "t3_why": "encoder after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 41.5,
      "ci": [
       40.71,
       42.21
      ],
      "rank": 10,
      "rank_ci": [
       10,
       11
      ],
      "index4": null,
      "T1": 0.9044,
      "T2": 0.6533,
      "T2_labels": 10,
      "T4": 0.5647,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 80.89,
       "T2": 30.66,
       "T4": 12.95,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9616,
       "1-10": 0.8969,
       "11-100": 0.8816,
       "101-1000": 0.8618,
       ">1000": 0.8374
      },
      "ci_family": [
       37.2,
       45.27
      ],
      "rank_ci_family": [
       10,
       11
      ],
      "index_r14": 41.53,
      "rank_r14": 10,
      "T4_recall10": 0.0149
     },
     "all": {
      "index": 44.43,
      "ci": [
       43.96,
       44.87
      ],
      "rank": 11,
      "rank_ci": [
       9,
       11
      ],
      "index4": null,
      "T1": 0.8833,
      "T2": 0.7125,
      "T2_labels": 11,
      "T4": 0.5707,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 76.66,
       "T2": 42.5,
       "T4": 14.14,
       "T3": null
      },
      "T4_recall10": 0.0228
     }
    },
    "mlp": {
     "0-10": {
      "index": 50.04,
      "ci": [
       49.35,
       50.73
      ],
      "rank": 10,
      "rank_ci": [
       10,
       10
      ],
      "index4": null,
      "T1": 0.9557,
      "T2": 0.7302,
      "T2_labels": 10,
      "T4": 0.5647,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 91.13,
       "T2": 46.04,
       "T4": 12.95,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9856,
       "1-10": 0.9517,
       "11-100": 0.9281,
       "101-1000": 0.9027,
       ">1000": 0.8714
      },
      "T4_recall10": 0.0149
     },
     "all": {
      "index": 51.77,
      "ci": [
       51.39,
       52.18
      ],
      "rank": 9,
      "rank_ci": [
       8,
       11
      ],
      "index4": null,
      "T1": 0.9298,
      "T2": 0.7761,
      "T2_labels": 11,
      "T4": 0.5707,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 85.95,
       "T2": 55.21,
       "T4": 14.14,
       "T3": null
      },
      "T4_recall10": 0.0228
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "t23l__qwen8b",
   "name": "GenePT text, generated summaries removed",
   "short": "GenePT text, generated removed",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Summary-filtered text (generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "GenePT's October-2023 NCBI text with generated summaries removed (corpus L), Qwen3-Embedding-8B",
    "date": "text Oct 2023; encoder 2025",
    "signal": "curated prose and encoder memory remain; generated summaries removed",
    "t3": "no",
    "t3_why": "encoder after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 34.19,
      "ci": [
       33.28,
       35.08
      ],
      "rank": 18,
      "rank_ci": [
       17,
       18
      ],
      "index4": null,
      "T1": 0.8325,
      "T2": 0.6242,
      "T2_labels": 10,
      "T4": 0.5561,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 66.49,
       "T2": 24.85,
       "T4": 11.22,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9349,
       "1-10": 0.819,
       "11-100": 0.8551,
       "101-1000": 0.8591,
       ">1000": 0.8427
      },
      "ci_family": [
       30.53,
       37.77
      ],
      "rank_ci_family": [
       17,
       18
      ],
      "index_r14": 34.16,
      "rank_r14": 18,
      "T4_recall10": 0.0135
     },
     "all": {
      "index": 40.7,
      "ci": [
       40.23,
       41.19
      ],
      "rank": 14,
      "rank_ci": [
       14,
       15
      ],
      "index4": null,
      "T1": 0.849,
      "T2": 0.7085,
      "T2_labels": 11,
      "T4": 0.5531,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 69.79,
       "T2": 41.69,
       "T4": 10.61,
       "T3": null
      },
      "T4_recall10": 0.0208
     }
    },
    "mlp": {
     "0-10": {
      "index": 43.95,
      "ci": [
       43.22,
       44.75
      ],
      "rank": 18,
      "rank_ci": [
       17,
       18
      ],
      "index4": null,
      "T1": 0.9245,
      "T2": 0.6786,
      "T2_labels": 10,
      "T4": 0.5561,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.91,
       "T2": 35.72,
       "T4": 11.22,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9721,
       "1-10": 0.9183,
       "11-100": 0.9231,
       "101-1000": 0.9117,
       ">1000": 0.8812
      },
      "T4_recall10": 0.0135
     },
     "all": {
      "index": 48.64,
      "ci": [
       48.22,
       49.06
      ],
      "rank": 12,
      "rank_ci": [
       12,
       14
      ],
      "index4": null,
      "T1": 0.9202,
      "T2": 0.7562,
      "T2_labels": 11,
      "T4": 0.5531,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.05,
       "T2": 51.25,
       "T4": 10.61,
       "T3": null
      },
      "T4_recall10": 0.0208
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "text_symbol",
   "name": "Gene symbol only",
   "short": "Gene symbol only",
   "version": "v1",
   "in_v0": true,
   "modality": "text",
   "cls": "clean",
   "text": "symbol",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Gene symbol only",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "the HGNC symbol alone, embedded with Qwen3-Embedding-8B",
    "date": "encoder 2025",
    "signal": "none in the text; encoder memory",
    "t3": "no",
    "t3_why": "encoder after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 35.6,
      "ci": [
       34.71,
       36.4
      ],
      "rank": 16,
      "rank_ci": [
       15,
       17
      ],
      "index4": null,
      "T1": 0.8539,
      "T2": 0.6232,
      "T2_labels": 10,
      "T4": 0.5569,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 70.78,
       "T2": 24.64,
       "T4": 11.38,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9361,
       "1-10": 0.8431,
       "11-100": 0.8444,
       "101-1000": 0.8479,
       ">1000": 0.8494
      },
      "ci_family": [
       31.97,
       39.15
      ],
      "rank_ci_family": [
       14,
       17
      ],
      "index_r14": 35.6,
      "rank_r14": 16,
      "T4_recall10": 0.0181
     },
     "all": {
      "index": 39.3,
      "ci": [
       38.82,
       39.73
      ],
      "rank": 16,
      "rank_ci": [
       16,
       16
      ],
      "index4": null,
      "T1": 0.848,
      "T2": 0.6758,
      "T2_labels": 11,
      "T4": 0.5657,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 69.6,
       "T2": 35.16,
       "T4": 13.14,
       "T3": null
      },
      "T4_recall10": 0.0243
     }
    },
    "mlp": {
     "0-10": {
      "index": 45.86,
      "ci": [
       45.12,
       46.57
      ],
      "rank": 15,
      "rank_ci": [
       14,
       15
      ],
      "index4": null,
      "T1": 0.933,
      "T2": 0.698,
      "T2_labels": 10,
      "T4": 0.5569,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 86.6,
       "T2": 39.59,
       "T4": 11.38,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9806,
       "1-10": 0.9267,
       "11-100": 0.9169,
       "101-1000": 0.9019,
       ">1000": 0.8813
      },
      "T4_recall10": 0.0181
     },
     "all": {
      "index": 48.55,
      "ci": [
       48.11,
       48.95
      ],
      "rank": 14,
      "rank_ci": [
       12,
       14
      ],
      "index4": null,
      "T1": 0.9178,
      "T2": 0.7448,
      "T2_labels": 11,
      "T4": 0.5657,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.55,
       "T2": 48.96,
       "T4": 13.14,
       "T3": null
      },
      "T4_recall10": 0.0243
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "dna300m",
   "name": "GB.DNA-300M",
   "short": "GB.DNA-300M",
   "version": "v1",
   "in_v0": false,
   "modality": "dna",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19236,
   "meta": {
    "training": "genomes of 796 species (10.6 billion nucleotides; NCBI assemblies)",
    "date": "2024",
    "signal": "none",
    "t3": "yes",
    "t3_why": "sequence rule",
    "source": "https://huggingface.co/genbio-ai/AIDO.DNA-300M",
    "cite": "GenBio AI, 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 30.97,
      "ci": [
       30.15,
       31.8
      ],
      "rank": 20,
      "rank_ci": [
       19,
       20
      ],
      "index4": 30.49,
      "T1": 0.7045,
      "T2": 0.6779,
      "T2_labels": 10,
      "T4": 0.5823,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.6453,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 40.89,
       "T2": 35.57,
       "T4": 16.45,
       "T3": 29.06
      },
      "T1_bins": {
       "zero": 0.8506,
       "1-10": 0.6852,
       "11-100": 0.6758,
       "101-1000": 0.6748,
       ">1000": 0.6459
      },
      "ci_family": [
       29.15,
       33.06
      ],
      "rank_ci_family": [
       19,
       20
      ],
      "index_r14": 30.97,
      "rank_r14": 20,
      "T4_recall10": 0.0038
     },
     "all": {
      "index": 29.3,
      "ci": [
       28.84,
       29.77
      ],
      "rank": 20,
      "rank_ci": [
       20,
       20
      ],
      "index4": 30.01,
      "T1": 0.6832,
      "T2": 0.6852,
      "T2_labels": 11,
      "T4": 0.5711,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.6606,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 36.65,
       "T2": 37.04,
       "T4": 14.22,
       "T3": 32.13
      },
      "T4_recall10": 0.0031
     }
    },
    "mlp": {
     "0-10": {
      "index": 38.92,
      "ci": [
       38.29,
       39.57
      ],
      "rank": 20,
      "rank_ci": [
       20,
       20
      ],
      "index4": 44.46,
      "T1": 0.8409,
      "T2": 0.6606,
      "T2_labels": 10,
      "T4": 0.5823,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8054,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 68.19,
       "T2": 32.13,
       "T4": 16.45,
       "T3": 61.08
      },
      "T1_bins": {
       "zero": 0.9226,
       "1-10": 0.8302,
       "11-100": 0.8082,
       "101-1000": 0.7924,
       ">1000": 0.7675
      },
      "T4_recall10": 0.0038
     },
     "all": {
      "index": 36.33,
      "ci": [
       35.9,
       36.74
      ],
      "rank": 20,
      "rank_ci": [
       20,
       20
      ],
      "index4": 41.53,
      "T1": 0.8136,
      "T2": 0.6603,
      "T2_labels": 11,
      "T4": 0.5711,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.7857,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 62.72,
       "T2": 32.05,
       "T4": 14.22,
       "T3": 57.14
      },
      "T4_recall10": 0.0031
     }
    }
   },
   "coverage": {
    "n_present": 19236,
    "share_missing": 0.001,
    "missing_by_bin": {
     "zero": 4,
     "1-10": 6,
     "11-100": 5,
     "101-1000": 4,
     ">1000": 1
    }
   }
  },
  {
   "track": "O",
   "tag": "rna1b6",
   "name": "GB.RNA-1.6B",
   "short": "GB.RNA-1.6B",
   "version": "v1",
   "in_v0": false,
   "modality": "rna",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19228,
   "meta": {
    "training": "42 million non-coding RNA sequences, RNAcentral 24.0",
    "date": "2024",
    "signal": "none",
    "t3": "yes",
    "t3_why": "sequence rule",
    "source": "https://huggingface.co/genbio-ai/AIDO.RNA-1.6B",
    "cite": "GenBio AI, 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 39.9,
      "ci": [
       39.2,
       40.65
      ],
      "rank": 12,
      "rank_ci": [
       12,
       13
      ],
      "index4": 42.58,
      "T1": 0.8003,
      "T2": 0.6707,
      "T2_labels": 10,
      "T4": 0.6275,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.753,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 60.06,
       "T2": 34.15,
       "T4": 25.5,
       "T3": 50.6
      },
      "T1_bins": {
       "zero": 0.8955,
       "1-10": 0.7877,
       "11-100": 0.7842,
       "101-1000": 0.7706,
       ">1000": 0.7405
      },
      "ci_family": [
       35.47,
       43.74
      ],
      "rank_ci_family": [
       11,
       14
      ],
      "index_r14": 39.9,
      "rank_r14": 12,
      "T4_recall10": 0.0077
     },
     "all": {
      "index": 40.44,
      "ci": [
       39.99,
       40.87
      ],
      "rank": 15,
      "rank_ci": [
       14,
       15
      ],
      "index4": 44.42,
      "T1": 0.7852,
      "T2": 0.7085,
      "T2_labels": 11,
      "T4": 0.6129,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.7818,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 57.03,
       "T2": 41.71,
       "T4": 22.57,
       "T3": 56.36
      },
      "T4_recall10": 0.0059
     }
    },
    "mlp": {
     "0-10": {
      "index": 47.27,
      "ci": [
       46.6,
       47.93
      ],
      "rank": 13,
      "rank_ci": [
       11,
       13
      ],
      "index4": 54.1,
      "T1": 0.887,
      "T2": 0.6945,
      "T2_labels": 10,
      "T4": 0.6275,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8729,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 77.4,
       "T2": 38.9,
       "T4": 25.5,
       "T3": 74.59
      },
      "T1_bins": {
       "zero": 0.9521,
       "1-10": 0.8784,
       "11-100": 0.8638,
       "101-1000": 0.852,
       ">1000": 0.824
      },
      "T4_recall10": 0.0077
     },
     "all": {
      "index": 45.95,
      "ci": [
       45.51,
       46.34
      ],
      "rank": 16,
      "rank_ci": [
       16,
       17
      ],
      "index4": 52.95,
      "T1": 0.8673,
      "T2": 0.7091,
      "T2_labels": 11,
      "T4": 0.6129,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8698,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 73.45,
       "T2": 41.83,
       "T4": 22.57,
       "T3": 73.96
      },
      "T4_recall10": 0.0059
     }
    }
   },
   "coverage": {
    "n_present": 19228,
    "share_missing": 0.0015,
    "missing_by_bin": {
     "zero": 6,
     "1-10": 8,
     "11-100": 9,
     "101-1000": 4,
     ">1000": 1
    }
   }
  },
  {
   "track": "O",
   "tag": "esm1b",
   "name": "ESM1b",
   "short": "ESM1b",
   "version": "v1",
   "in_v0": false,
   "modality": "protein",
   "cls": "bio",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "No text embedded; trained without text",
   "gen_share": null,
   "n_genes": 19133,
   "meta": {
    "training": "UniRef50 2018_03, masked language modelling",
    "date": "2018",
    "signal": "none",
    "t3": "yes",
    "t3_why": "sequence rule",
    "source": "https://github.com/facebookresearch/esm",
    "cite": "Rives et al., 2021"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 43.91,
      "ci": [
       43.15,
       44.71
      ],
      "rank": 6,
      "rank_ci": [
       5,
       6
      ],
      "index4": 46.39,
      "T1": 0.8733,
      "T2": 0.6736,
      "T2_labels": 10,
      "T4": 0.6118,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.7691,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 74.66,
       "T2": 34.72,
       "T4": 22.36,
       "T3": 53.83
      },
      "T1_bins": {
       "zero": 0.9556,
       "1-10": 0.8624,
       "11-100": 0.8528,
       "101-1000": 0.8268,
       ">1000": 0.7953
      },
      "ci_family": [
       39.08,
       48.36
      ],
      "rank_ci_family": [
       5,
       6
      ],
      "index_r14": 43.9,
      "rank_r14": 5,
      "T4_recall10": 0.0174
     },
     "all": {
      "index": 44.46,
      "ci": [
       44.03,
       44.9
      ],
      "rank": 10,
      "rank_ci": [
       10,
       11
      ],
      "index4": 49.6,
      "T1": 0.8523,
      "T2": 0.7138,
      "T2_labels": 11,
      "T4": 0.6007,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8252,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 70.45,
       "T2": 42.77,
       "T4": 20.15,
       "T3": 65.04
      },
      "T4_recall10": 0.0166
     }
    },
    "mlp": {
     "0-10": {
      "index": 53.25,
      "ci": [
       52.61,
       53.91
      ],
      "rank": 4,
      "rank_ci": [
       4,
       4
      ],
      "index4": 60.75,
      "T1": 0.9449,
      "T2": 0.742,
      "T2_labels": 10,
      "T4": 0.6118,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.9164,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 88.99,
       "T2": 48.4,
       "T4": 22.36,
       "T3": 83.27
      },
      "T1_bins": {
       "zero": 0.9818,
       "1-10": 0.9401,
       "11-100": 0.928,
       "101-1000": 0.907,
       ">1000": 0.8773
      },
      "T4_recall10": 0.0174
     },
     "all": {
      "index": 52.24,
      "ci": [
       51.83,
       52.64
      ],
      "rank": 8,
      "rank_ci": [
       7,
       9
      ],
      "index4": 60.56,
      "T1": 0.9276,
      "T2": 0.7552,
      "T2_labels": 11,
      "T4": 0.6007,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.9276,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 85.51,
       "T2": 51.05,
       "T4": 20.15,
       "T3": 85.51
      },
      "T4_recall10": 0.0166
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "protst",
   "name": "ProtST-ESM1b (text-aligned)",
   "short": "ProtST-ESM1b",
   "version": "v1",
   "in_v0": false,
   "modality": "text-aligned protein",
   "cls": "biotext",
   "text": null,
   "train_text": "UniProt function text (Swiss-Prot 2022)",
   "encoder": null,
   "text_label": "No text embedded; UniProt function text (Swiss-Prot 2022) used in training",
   "gen_share": null,
   "n_genes": 19133,
   "meta": {
    "training": "ESM1b aligned with Swiss-Prot function text (ProtDescribe)",
    "date": "Swiss-Prot 2022",
    "signal": "UniProt function text (co-curated with GOA)",
    "t3": "yes",
    "t3_why": "training text predates the cutoff",
    "source": "https://github.com/DeepGraphLearning/ProtST",
    "cite": "Xu et al., 2023"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 46.33,
      "ci": [
       45.57,
       47.05
      ],
      "rank": 3,
      "rank_ci": [
       2,
       3
      ],
      "index4": 51.54,
      "T1": 0.8918,
      "T2": 0.7293,
      "T2_labels": 10,
      "T4": 0.5739,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.8359,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 78.36,
       "T2": 45.86,
       "T4": 14.78,
       "T3": 67.18
      },
      "T1_bins": {
       "zero": 0.9543,
       "1-10": 0.8835,
       "11-100": 0.8805,
       "101-1000": 0.8567,
       ">1000": 0.8266
      },
      "ci_family": [
       42.41,
       49.97
      ],
      "rank_ci_family": [
       1,
       4
      ],
      "index_r14": 46.33,
      "rank_r14": 3,
      "T4_recall10": 0.0139
     },
     "all": {
      "index": 48.03,
      "ci": [
       47.59,
       48.46
      ],
      "rank": 3,
      "rank_ci": [
       3,
       4
      ],
      "index4": 54.29,
      "T1": 0.8778,
      "T2": 0.773,
      "T2_labels": 11,
      "T4": 0.5697,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.8653,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 75.55,
       "T2": 54.6,
       "T4": 13.94,
       "T3": 73.05
      },
      "T4_recall10": 0.0128
     }
    },
    "mlp": {
     "0-10": {
      "index": 51.57,
      "ci": [
       50.94,
       52.22
      ],
      "rank": 8,
      "rank_ci": [
       6,
       8
      ],
      "index4": 59.67,
      "T1": 0.9493,
      "T2": 0.7504,
      "T2_labels": 10,
      "T4": 0.5739,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": 0.9199,
      "T3_n": 137,
      "T3_novel": null,
      "skills": {
       "T1": 89.86,
       "T2": 50.08,
       "T4": 14.78,
       "T3": 83.98
      },
      "T1_bins": {
       "zero": 0.9804,
       "1-10": 0.9452,
       "11-100": 0.938,
       "101-1000": 0.9188,
       ">1000": 0.8965
      },
      "T4_recall10": 0.0139
     },
     "all": {
      "index": 51.76,
      "ci": [
       51.33,
       52.13
      ],
      "rank": 10,
      "rank_ci": [
       9,
       10
      ],
      "index4": 60.27,
      "T1": 0.9365,
      "T2": 0.7702,
      "T2_labels": 11,
      "T4": 0.5697,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.929,
      "T3_n": 347,
      "T3_novel": null,
      "skills": {
       "T1": 87.3,
       "T2": 54.04,
       "T4": 13.94,
       "T3": 85.8
      },
      "T4_recall10": 0.0128
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "protrek",
   "name": "ProTrek-650M (text-aligned)",
   "short": "ProTrek-650M",
   "version": "v1",
   "in_v0": false,
   "modality": "text-aligned protein",
   "cls": "biotext",
   "text": null,
   "train_text": "UniProt function text (Swiss-Prot 2024)",
   "encoder": null,
   "text_label": "No text embedded; UniProt function text (Swiss-Prot 2024) used in training",
   "gen_share": null,
   "n_genes": 19133,
   "meta": {
    "training": "ESM2-650M aligned with Swiss-Prot text and structure, contrastive",
    "date": "Swiss-Prot 2024",
    "signal": "UniProt function text",
    "t3": "no",
    "t3_why": "training text after the cutoff",
    "source": "https://github.com/westlake-repl/ProTrek",
    "cite": "Su et al., 2024"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 46.96,
      "ci": [
       46.21,
       47.65
      ],
      "rank": 2,
      "rank_ci": [
       1,
       2
      ],
      "index4": null,
      "T1": 0.9037,
      "T2": 0.6979,
      "T2_labels": 10,
      "T4": 0.6029,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 80.74,
       "T2": 39.57,
       "T4": 20.58,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.952,
       "1-10": 0.8973,
       "11-100": 0.8908,
       "101-1000": 0.876,
       ">1000": 0.8597
      },
      "ci_family": [
       41.29,
       51.72
      ],
      "rank_ci_family": [
       1,
       3
      ],
      "index_r14": 46.96,
      "rank_r14": 2,
      "T4_recall10": 0.0173
     },
     "all": {
      "index": 48.77,
      "ci": [
       48.33,
       49.2
      ],
      "rank": 2,
      "rank_ci": [
       2,
       2
      ],
      "index4": null,
      "T1": 0.8909,
      "T2": 0.7486,
      "T2_labels": 11,
      "T4": 0.5921,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 78.18,
       "T2": 49.72,
       "T4": 18.41,
       "T3": null
      },
      "T4_recall10": 0.016
     }
    },
    "mlp": {
     "0-10": {
      "index": 53.94,
      "ci": [
       53.29,
       54.56
      ],
      "rank": 3,
      "rank_ci": [
       2,
       3
      ],
      "index4": null,
      "T1": 0.9596,
      "T2": 0.7467,
      "T2_labels": 10,
      "T4": 0.6029,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 91.91,
       "T2": 49.33,
       "T4": 20.58,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9858,
       "1-10": 0.9561,
       "11-100": 0.9438,
       "101-1000": 0.9219,
       ">1000": 0.8972
      },
      "T4_recall10": 0.0173
     },
     "all": {
      "index": 54.03,
      "ci": [
       53.6,
       54.44
      ],
      "rank": 3,
      "rank_ci": [
       3,
       4
      ],
      "index4": null,
      "T1": 0.943,
      "T2": 0.7754,
      "T2_labels": 11,
      "T4": 0.5921,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 88.59,
       "T2": 55.09,
       "T4": 18.41,
       "T3": null
      },
      "T4_recall10": 0.016
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "text_uniprot",
   "name": "UniProt function text only",
   "short": "UniProt function text",
   "version": "v1",
   "in_v0": false,
   "modality": "text",
   "cls": "clean",
   "text": "uniprot",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "UniProt function text only (co-curated with GOA)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "UniProt function text of October 2026, embedded with Qwen3-Embedding-8B",
    "date": "text 2026; encoder 2025",
    "signal": "UniProt text (co-curated with GOA)",
    "t3": "no",
    "t3_why": "text after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 42.46,
      "ci": [
       41.66,
       43.19
      ],
      "rank": 9,
      "rank_ci": [
       8,
       9
      ],
      "index4": null,
      "T1": 0.9162,
      "T2": 0.6466,
      "T2_labels": 10,
      "T4": 0.574,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.24,
       "T2": 29.32,
       "T4": 14.81,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9398,
       "1-10": 0.9131,
       "11-100": 0.9109,
       "101-1000": 0.889,
       ">1000": 0.8643
      },
      "T2_per_label": {
       "depmap_essential": 0.8151,
       "hpa_loc_nucleoplasm": 0.6546,
       "hpa_loc_cytosol": 0.54,
       "hpa_loc_plasma_membrane": 0.5634,
       "hpa_loc_vesicles": 0.5203,
       "hpa_loc_mitochondria": 0.6872,
       "hpa_loc_golgi_apparatus": 0.5535,
       "gtex_tissue_specific": 0.7443,
       "hpa_tissue_enriched": 0.7576,
       "constraint": 0.6303
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       38.0,
       46.25
      ],
      "rank_ci_family": [
       7,
       10
      ],
      "index_r14": 42.46,
      "rank_r14": 9,
      "T4_recall10": 0.0204
     },
     "all": {
      "index": 46.56,
      "ci": [
       46.13,
       47.05
      ],
      "rank": 6,
      "rank_ci": [
       5,
       7
      ],
      "index4": null,
      "T1": 0.907,
      "T2": 0.7064,
      "T2_labels": 11,
      "T4": 0.5851,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 81.4,
       "T2": 41.28,
       "T4": 17.02,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8557,
       "hpa_loc_nucleoplasm": 0.704,
       "hpa_loc_cytosol": 0.5986,
       "hpa_loc_plasma_membrane": 0.6713,
       "hpa_loc_vesicles": 0.6037,
       "hpa_loc_mitochondria": 0.7567,
       "hpa_loc_golgi_apparatus": 0.6074,
       "gtex_tissue_specific": 0.8253,
       "hpa_tissue_enriched": 0.8108,
       "clingen_hi": 0.6294,
       "constraint": 0.7073
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0312
     }
    },
    "mlp": {
     "0-10": {
      "index": 51.61,
      "ci": [
       50.89,
       52.29
      ],
      "rank": 7,
      "rank_ci": [
       6,
       8
      ],
      "index4": null,
      "T1": 0.9668,
      "T2": 0.7333,
      "T2_labels": 10,
      "T4": 0.574,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 93.36,
       "T2": 46.65,
       "T4": 14.81,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9844,
       "1-10": 0.9645,
       "11-100": 0.9506,
       "101-1000": 0.9244,
       ">1000": 0.8938
      },
      "T2_per_label": {
       "depmap_essential": 0.9399,
       "hpa_loc_nucleoplasm": 0.6621,
       "hpa_loc_cytosol": 0.6215,
       "hpa_loc_plasma_membrane": 0.6643,
       "hpa_loc_vesicles": 0.6467,
       "hpa_loc_mitochondria": 0.75,
       "hpa_loc_golgi_apparatus": 0.6972,
       "gtex_tissue_specific": 0.8293,
       "hpa_tissue_enriched": 0.8289,
       "constraint": 0.6927
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0204
     },
     "all": {
      "index": 53.98,
      "ci": [
       53.55,
       54.39
      ],
      "rank": 4,
      "rank_ci": [
       3,
       5
      ],
      "index4": null,
      "T1": 0.9488,
      "T2": 0.7758,
      "T2_labels": 11,
      "T4": 0.5851,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 89.75,
       "T2": 55.16,
       "T4": 17.02,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9565,
       "hpa_loc_nucleoplasm": 0.7386,
       "hpa_loc_cytosol": 0.6559,
       "hpa_loc_plasma_membrane": 0.7708,
       "hpa_loc_vesicles": 0.7004,
       "hpa_loc_mitochondria": 0.832,
       "hpa_loc_golgi_apparatus": 0.7294,
       "gtex_tissue_specific": 0.8761,
       "hpa_tissue_enriched": 0.8605,
       "clingen_hi": 0.6434,
       "constraint": 0.7701
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0312
     }
    }
   },
   "coverage": {
    "n_present": 19256,
    "share_missing": 0.0,
    "missing_by_bin": {
     "zero": 0,
     "1-10": 0,
     "11-100": 0,
     "101-1000": 0,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "fusion_p16b_refseq",
   "name": "GB.Protein-16B ⊕ rich summary-filtered text",
   "short": "GB.Protein-16B ⊕ text",
   "version": "v1",
   "in_v0": false,
   "modality": "mixture",
   "cls": "biotext",
   "text": "mixture",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Declared mixture; the text component is summary-filtered text (contains UniProt function text)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "concatenation of the standardised GB.Protein-16B and rich summary-filtered text embeddings",
    "date": "mixed",
    "signal": "UniProt text",
    "t3": "no",
    "t3_why": "text component after the cutoff",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 47.09,
      "ci": [
       46.32,
       47.81
      ],
      "rank": 1,
      "rank_ci": [
       1,
       2
      ],
      "index4": null,
      "T1": 0.9212,
      "T2": 0.6578,
      "T2_labels": 10,
      "T4": 0.6273,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.24,
       "T2": 31.57,
       "T4": 25.45,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9491,
       "1-10": 0.9175,
       "11-100": 0.9117,
       "101-1000": 0.8859,
       ">1000": 0.8603
      },
      "T2_per_label": {
       "depmap_essential": 0.8147,
       "hpa_loc_nucleoplasm": 0.6455,
       "hpa_loc_cytosol": 0.5316,
       "hpa_loc_plasma_membrane": 0.5563,
       "hpa_loc_vesicles": 0.5266,
       "hpa_loc_mitochondria": 0.7074,
       "hpa_loc_golgi_apparatus": 0.528,
       "gtex_tissue_specific": 0.7938,
       "hpa_tissue_enriched": 0.7817,
       "constraint": 0.6929
      },
      "T2_per_label_source": "round-14 regeneration",
      "ci_family": [
       41.75,
       51.41
      ],
      "rank_ci_family": [
       1,
       3
      ],
      "index_r14": 47.09,
      "rank_r14": 1,
      "T4_recall10": 0.0238
     },
     "all": {
      "index": 50.43,
      "ci": [
       50.0,
       50.87
      ],
      "rank": 1,
      "rank_ci": [
       1,
       1
      ],
      "index4": null,
      "T1": 0.9081,
      "T2": 0.7203,
      "T2_labels": 11,
      "T4": 0.628,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 81.63,
       "T2": 44.05,
       "T4": 25.6,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8457,
       "hpa_loc_nucleoplasm": 0.7083,
       "hpa_loc_cytosol": 0.5943,
       "hpa_loc_plasma_membrane": 0.6618,
       "hpa_loc_vesicles": 0.6026,
       "hpa_loc_mitochondria": 0.7749,
       "hpa_loc_golgi_apparatus": 0.59,
       "gtex_tissue_specific": 0.8633,
       "hpa_tissue_enriched": 0.8351,
       "clingen_hi": 0.6895,
       "constraint": 0.7575
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0322
     }
    },
    "mlp": {
     "0-10": {
      "index": 58.25,
      "ci": [
       57.57,
       58.86
      ],
      "rank": 1,
      "rank_ci": [
       1,
       1
      ],
      "index4": null,
      "T1": 0.9696,
      "T2": 0.7769,
      "T2_labels": 10,
      "T4": 0.6273,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 93.91,
       "T2": 55.38,
       "T4": 25.45,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.986,
       "1-10": 0.9674,
       "11-100": 0.9542,
       "101-1000": 0.9293,
       ">1000": 0.8993
      },
      "T2_per_label": {
       "depmap_essential": 0.9602,
       "hpa_loc_nucleoplasm": 0.6625,
       "hpa_loc_cytosol": 0.6421,
       "hpa_loc_plasma_membrane": 0.7012,
       "hpa_loc_vesicles": 0.6593,
       "hpa_loc_mitochondria": 0.7844,
       "hpa_loc_golgi_apparatus": 0.7047,
       "gtex_tissue_specific": 0.9019,
       "hpa_tissue_enriched": 0.8897,
       "constraint": 0.8629
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0238
     },
     "all": {
      "index": 59.51,
      "ci": [
       59.13,
       59.89
      ],
      "rank": 1,
      "rank_ci": [
       1,
       1
      ],
      "index4": null,
      "T1": 0.9524,
      "T2": 0.8122,
      "T2_labels": 11,
      "T4": 0.628,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 90.48,
       "T2": 62.44,
       "T4": 25.6,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9659,
       "hpa_loc_nucleoplasm": 0.7625,
       "hpa_loc_cytosol": 0.6882,
       "hpa_loc_plasma_membrane": 0.7873,
       "hpa_loc_vesicles": 0.7153,
       "hpa_loc_mitochondria": 0.8524,
       "hpa_loc_golgi_apparatus": 0.7409,
       "gtex_tissue_specific": 0.9211,
       "hpa_tissue_enriched": 0.9003,
       "clingen_hi": 0.7221,
       "constraint": 0.8783
      },
      "T2_per_label_source": "round-14 regeneration",
      "T4_recall10": 0.0322
     }
    }
   },
   "coverage": {
    "n_present": 19133,
    "share_missing": 0.0064,
    "missing_by_bin": {
     "zero": 16,
     "1-10": 59,
     "11-100": 42,
     "101-1000": 6,
     ">1000": 0
    }
   }
  },
  {
   "track": "O",
   "tag": "text_refseq_nouni",
   "name": "Rich summary-filtered text without UniProt function text",
   "short": "Summary-filtered, no UniProt text",
   "version": "v1.1",
   "in_v0": false,
   "modality": "text",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Summary-filtered text (generated summaries removed); UniProt function text removed as well",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "“Gene SYMBOL (name). RefSeq summary” without UniProt function text, Qwen3-Embedding-8B",
    "date": "text 2026; encoder 2025",
    "signal": "RefSeq prose; encoder memory",
    "t3": "no",
    "t3_why": "text after the cutoff",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 37.85,
      "ci": [
       37.01,
       38.64
      ],
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8595,
      "T2": 0.64,
      "T2_labels": 10,
      "T4": 0.5683,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 71.9,
       "T2": 28.0,
       "T4": 13.65,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8143,
       "hpa_loc_nucleoplasm": 0.6135,
       "hpa_loc_cytosol": 0.5396,
       "hpa_loc_plasma_membrane": 0.5544,
       "hpa_loc_vesicles": 0.5284,
       "hpa_loc_mitochondria": 0.695,
       "hpa_loc_golgi_apparatus": 0.5569,
       "gtex_tissue_specific": 0.722,
       "hpa_tissue_enriched": 0.7462,
       "constraint": 0.6299
      },
      "T1_bins": {
       "zero": 0.9361,
       "1-10": 0.8494,
       "11-100": 0.8653,
       "101-1000": 0.8587,
       ">1000": 0.8433
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0168
     },
     "all": {
      "index": 42.56,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8618,
      "T2": 0.7094,
      "T2_labels": 11,
      "T4": 0.5673,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 72.35,
       "T2": 41.88,
       "T4": 13.46,
       "T3": null
      },
      "T2_fixed": 0.7089,
      "index_fixedT2": 42.53,
      "T2_per_label": {
       "depmap_essential": 0.8335,
       "hpa_loc_nucleoplasm": 0.694,
       "hpa_loc_cytosol": 0.601,
       "hpa_loc_plasma_membrane": 0.665,
       "hpa_loc_vesicles": 0.6091,
       "hpa_loc_mitochondria": 0.7693,
       "hpa_loc_golgi_apparatus": 0.6085,
       "gtex_tissue_specific": 0.8069,
       "hpa_tissue_enriched": 0.7934,
       "clingen_hi": 0.7138,
       "constraint": 0.7087
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0239
     }
    },
    "mlp": {
     "0-10": {
      "index": 46.92,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9334,
      "T2": 0.7022,
      "T2_labels": 10,
      "T4": 0.5683,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 86.68,
       "T2": 40.43,
       "T4": 13.65,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8986,
       "hpa_loc_nucleoplasm": 0.6278,
       "hpa_loc_cytosol": 0.5846,
       "hpa_loc_plasma_membrane": 0.6645,
       "hpa_loc_vesicles": 0.6293,
       "hpa_loc_mitochondria": 0.7486,
       "hpa_loc_golgi_apparatus": 0.6433,
       "gtex_tissue_specific": 0.7637,
       "hpa_tissue_enriched": 0.7919,
       "constraint": 0.6694
      },
      "T1_bins": {
       "zero": 0.9751,
       "1-10": 0.9279,
       "11-100": 0.9238,
       "101-1000": 0.9064,
       ">1000": 0.8768
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0168
     },
     "all": {
      "index": 50.31,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.922,
      "T2": 0.7653,
      "T2_labels": 11,
      "T4": 0.5673,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.4,
       "T2": 53.06,
       "T4": 13.46,
       "T3": null
      },
      "T2_fixed": 0.7668,
      "index_fixedT2": 50.41,
      "T2_per_label": {
       "depmap_essential": 0.9245,
       "hpa_loc_nucleoplasm": 0.7223,
       "hpa_loc_cytosol": 0.6428,
       "hpa_loc_plasma_membrane": 0.7585,
       "hpa_loc_vesicles": 0.6753,
       "hpa_loc_mitochondria": 0.8193,
       "hpa_loc_golgi_apparatus": 0.6917,
       "gtex_tissue_specific": 0.8458,
       "hpa_tissue_enriched": 0.8356,
       "clingen_hi": 0.7501,
       "constraint": 0.7524
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0239
     }
    }
   },
   "t3_only": false
  },
  {
   "track": "O",
   "tag": "fusion_p16b_refseq_nouni",
   "name": "GB.Protein-16B ⊕ summary-filtered text without UniProt text",
   "short": "GB.Protein-16B ⊕ text, no UniProt",
   "version": "v1.1",
   "in_v0": false,
   "modality": "mixture",
   "cls": "biotext",
   "text": "mixture",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Declared mixture; the text component is summary-filtered text without UniProt function text",
   "gen_share": 0.0,
   "n_genes": 19133,
   "meta": {
    "training": "concatenation of GB.Protein-16B and the text row without UniProt function text",
    "date": "mixed",
    "signal": "RefSeq prose",
    "t3": "no",
    "t3_why": "text component after the cutoff",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 42.88,
      "ci": [
       42.12,
       43.65
      ],
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8741,
      "T2": 0.6502,
      "T2_labels": 10,
      "T4": 0.619,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 74.81,
       "T2": 30.04,
       "T4": 23.8,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8033,
       "hpa_loc_nucleoplasm": 0.6333,
       "hpa_loc_cytosol": 0.5401,
       "hpa_loc_plasma_membrane": 0.5268,
       "hpa_loc_vesicles": 0.5146,
       "hpa_loc_mitochondria": 0.6973,
       "hpa_loc_golgi_apparatus": 0.5361,
       "gtex_tissue_specific": 0.7777,
       "hpa_tissue_enriched": 0.7657,
       "constraint": 0.7073
      },
      "T1_bins": {
       "zero": 0.9416,
       "1-10": 0.8652,
       "11-100": 0.8697,
       "101-1000": 0.8536,
       ">1000": 0.8347
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0206
     },
     "all": {
      "index": 46.08,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8669,
      "T2": 0.7112,
      "T2_labels": 11,
      "T4": 0.6131,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 73.39,
       "T2": 42.24,
       "T4": 22.61,
       "T3": null
      },
      "T2_fixed": 0.7112,
      "index_fixedT2": 46.08,
      "T2_per_label": {
       "depmap_essential": 0.8212,
       "hpa_loc_nucleoplasm": 0.6971,
       "hpa_loc_cytosol": 0.5962,
       "hpa_loc_plasma_membrane": 0.6421,
       "hpa_loc_vesicles": 0.5914,
       "hpa_loc_mitochondria": 0.7618,
       "hpa_loc_golgi_apparatus": 0.5779,
       "gtex_tissue_specific": 0.8476,
       "hpa_tissue_enriched": 0.8176,
       "clingen_hi": 0.7114,
       "constraint": 0.7587
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0267
     }
    },
    "mlp": {
     "0-10": {
      "index": 54.89,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9462,
      "T2": 0.7581,
      "T2_labels": 10,
      "T4": 0.619,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 89.24,
       "T2": 51.63,
       "T4": 23.8,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9592,
       "hpa_loc_nucleoplasm": 0.6286,
       "hpa_loc_cytosol": 0.6321,
       "hpa_loc_plasma_membrane": 0.6804,
       "hpa_loc_vesicles": 0.648,
       "hpa_loc_mitochondria": 0.7803,
       "hpa_loc_golgi_apparatus": 0.6765,
       "gtex_tissue_specific": 0.8752,
       "hpa_tissue_enriched": 0.8452,
       "constraint": 0.856
      },
      "T1_bins": {
       "zero": 0.9805,
       "1-10": 0.9417,
       "11-100": 0.9329,
       "101-1000": 0.9112,
       ">1000": 0.883
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0206
     },
     "all": {
      "index": 56.36,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9313,
      "T2": 0.8011,
      "T2_labels": 11,
      "T4": 0.6131,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 86.25,
       "T2": 60.21,
       "T4": 22.61,
       "T3": null
      },
      "T2_fixed": 0.8066,
      "index_fixedT2": 56.73,
      "T2_per_label": {
       "depmap_essential": 0.9604,
       "hpa_loc_nucleoplasm": 0.7406,
       "hpa_loc_cytosol": 0.6742,
       "hpa_loc_plasma_membrane": 0.7718,
       "hpa_loc_vesicles": 0.7018,
       "hpa_loc_mitochondria": 0.8446,
       "hpa_loc_golgi_apparatus": 0.7198,
       "gtex_tissue_specific": 0.9083,
       "hpa_tissue_enriched": 0.874,
       "clingen_hi": 0.7462,
       "constraint": 0.8701
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0267
     }
    }
   },
   "t3_only": false
  },
  {
   "track": "O",
   "tag": "fusion_esm2_refseq",
   "name": "ESM2-650M ⊕ rich summary-filtered text",
   "short": "ESM2-650M ⊕ text",
   "version": "v1.1",
   "in_v0": false,
   "modality": "mixture",
   "cls": "biotext",
   "text": "mixture",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Declared mixture; the text component is summary-filtered text (contains UniProt function text)",
   "gen_share": 0.0,
   "n_genes": 19133,
   "meta": {
    "training": "concatenation of re-embedded ESM2-650M (round 14) and rich summary-filtered text",
    "date": "mixed",
    "signal": "UniProt text",
    "t3": "no",
    "t3_why": "text component after the cutoff",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 45.49,
      "ci": [
       44.8,
       46.21
      ],
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9211,
      "T2": 0.6611,
      "T2_labels": 10,
      "T4": 0.6002,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.21,
       "T2": 32.22,
       "T4": 20.04,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8207,
       "hpa_loc_nucleoplasm": 0.6472,
       "hpa_loc_cytosol": 0.5432,
       "hpa_loc_plasma_membrane": 0.5891,
       "hpa_loc_vesicles": 0.5231,
       "hpa_loc_mitochondria": 0.7002,
       "hpa_loc_golgi_apparatus": 0.5408,
       "gtex_tissue_specific": 0.7811,
       "hpa_tissue_enriched": 0.788,
       "constraint": 0.6777
      },
      "T1_bins": {
       "zero": 0.955,
       "1-10": 0.9166,
       "11-100": 0.9127,
       "101-1000": 0.8878,
       ">1000": 0.865
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.022
     },
     "all": {
      "index": 49.28,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9091,
      "T2": 0.723,
      "T2_labels": 11,
      "T4": 0.6071,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 81.81,
       "T2": 44.61,
       "T4": 21.41,
       "T3": null
      },
      "T2_fixed": 0.7254,
      "index_fixedT2": 49.43,
      "T2_per_label": {
       "depmap_essential": 0.8497,
       "hpa_loc_nucleoplasm": 0.7076,
       "hpa_loc_cytosol": 0.6065,
       "hpa_loc_plasma_membrane": 0.6763,
       "hpa_loc_vesicles": 0.6074,
       "hpa_loc_mitochondria": 0.7781,
       "hpa_loc_golgi_apparatus": 0.6016,
       "gtex_tissue_specific": 0.854,
       "hpa_tissue_enriched": 0.8316,
       "clingen_hi": 0.6996,
       "constraint": 0.7411
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0305
     }
    },
    "mlp": {
     "0-10": {
      "index": 55.38,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9684,
      "T2": 0.7621,
      "T2_labels": 10,
      "T4": 0.6002,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 93.69,
       "T2": 52.41,
       "T4": 20.04,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9593,
       "hpa_loc_nucleoplasm": 0.659,
       "hpa_loc_cytosol": 0.6278,
       "hpa_loc_plasma_membrane": 0.696,
       "hpa_loc_vesicles": 0.6599,
       "hpa_loc_mitochondria": 0.7943,
       "hpa_loc_golgi_apparatus": 0.7069,
       "gtex_tissue_specific": 0.8523,
       "hpa_tissue_enriched": 0.8623,
       "constraint": 0.8028
      },
      "T1_bins": {
       "zero": 0.9837,
       "1-10": 0.9664,
       "11-100": 0.9524,
       "101-1000": 0.9269,
       ">1000": 0.8921
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.022
     },
     "all": {
      "index": 57.64,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9506,
      "T2": 0.807,
      "T2_labels": 11,
      "T4": 0.6071,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 90.12,
       "T2": 61.39,
       "T4": 21.41,
       "T3": null
      },
      "T2_fixed": 0.8137,
      "index_fixedT2": 58.09,
      "T2_per_label": {
       "depmap_essential": 0.9671,
       "hpa_loc_nucleoplasm": 0.7581,
       "hpa_loc_cytosol": 0.6806,
       "hpa_loc_plasma_membrane": 0.7854,
       "hpa_loc_vesicles": 0.7113,
       "hpa_loc_mitochondria": 0.8554,
       "hpa_loc_golgi_apparatus": 0.7513,
       "gtex_tissue_specific": 0.9013,
       "hpa_tissue_enriched": 0.8835,
       "clingen_hi": 0.7396,
       "constraint": 0.843
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0305
     }
    }
   },
   "t3_only": false
  },
  {
   "track": "O",
   "tag": "fusion_esm2_refseq_nouni",
   "name": "ESM2-650M ⊕ summary-filtered text without UniProt text",
   "short": "ESM2-650M ⊕ text, no UniProt",
   "version": "v1.1",
   "in_v0": false,
   "modality": "mixture",
   "cls": "biotext",
   "text": "mixture",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Declared mixture; the text component is summary-filtered text without UniProt function text",
   "gen_share": 0.0,
   "n_genes": 19133,
   "meta": {
    "training": "concatenation of re-embedded ESM2-650M (round 14) and the text row without UniProt function text",
    "date": "mixed",
    "signal": "RefSeq prose",
    "t3": "no",
    "t3_why": "text component after the cutoff",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 41.22,
      "ci": [
       40.45,
       41.95
      ],
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8734,
      "T2": 0.6526,
      "T2_labels": 10,
      "T4": 0.5923,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 74.68,
       "T2": 30.51,
       "T4": 18.46,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.8126,
       "hpa_loc_nucleoplasm": 0.6334,
       "hpa_loc_cytosol": 0.5508,
       "hpa_loc_plasma_membrane": 0.5552,
       "hpa_loc_vesicles": 0.5316,
       "hpa_loc_mitochondria": 0.7046,
       "hpa_loc_golgi_apparatus": 0.5265,
       "gtex_tissue_specific": 0.759,
       "hpa_tissue_enriched": 0.7626,
       "constraint": 0.6894
      },
      "T1_bins": {
       "zero": 0.9481,
       "1-10": 0.8636,
       "11-100": 0.8701,
       "101-1000": 0.8558,
       ">1000": 0.8428
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0188
     },
     "all": {
      "index": 44.73,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8676,
      "T2": 0.7135,
      "T2_labels": 11,
      "T4": 0.5899,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 73.52,
       "T2": 42.7,
       "T4": 17.97,
       "T3": null
      },
      "T2_fixed": 0.7127,
      "index_fixedT2": 44.68,
      "T2_per_label": {
       "depmap_essential": 0.8194,
       "hpa_loc_nucleoplasm": 0.7034,
       "hpa_loc_cytosol": 0.6009,
       "hpa_loc_plasma_membrane": 0.6534,
       "hpa_loc_vesicles": 0.6074,
       "hpa_loc_mitochondria": 0.7721,
       "hpa_loc_golgi_apparatus": 0.5862,
       "gtex_tissue_specific": 0.8364,
       "hpa_tissue_enriched": 0.8094,
       "clingen_hi": 0.7216,
       "constraint": 0.7384
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0249
     }
    },
    "mlp": {
     "0-10": {
      "index": 51.72,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9425,
      "T2": 0.741,
      "T2_labels": 10,
      "T4": 0.5923,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 88.5,
       "T2": 48.2,
       "T4": 18.46,
       "T3": null
      },
      "T2_per_label": {
       "depmap_essential": 0.9446,
       "hpa_loc_nucleoplasm": 0.6324,
       "hpa_loc_cytosol": 0.619,
       "hpa_loc_plasma_membrane": 0.6807,
       "hpa_loc_vesicles": 0.6446,
       "hpa_loc_mitochondria": 0.7916,
       "hpa_loc_golgi_apparatus": 0.6686,
       "gtex_tissue_specific": 0.805,
       "hpa_tissue_enriched": 0.8129,
       "constraint": 0.8109
      },
      "T1_bins": {
       "zero": 0.9799,
       "1-10": 0.9376,
       "11-100": 0.9299,
       "101-1000": 0.9078,
       ">1000": 0.8787
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0188
     },
     "all": {
      "index": 54.03,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.928,
      "T2": 0.7926,
      "T2_labels": 11,
      "T4": 0.5899,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 85.59,
       "T2": 58.53,
       "T4": 17.97,
       "T3": null
      },
      "T2_fixed": 0.7969,
      "index_fixedT2": 54.31,
      "T2_per_label": {
       "depmap_essential": 0.9516,
       "hpa_loc_nucleoplasm": 0.7388,
       "hpa_loc_cytosol": 0.666,
       "hpa_loc_plasma_membrane": 0.7734,
       "hpa_loc_vesicles": 0.698,
       "hpa_loc_mitochondria": 0.8439,
       "hpa_loc_golgi_apparatus": 0.7251,
       "gtex_tissue_specific": 0.8767,
       "hpa_tissue_enriched": 0.8555,
       "clingen_hi": 0.7504,
       "constraint": 0.8396
      },
      "T2_per_label_source": "round 14",
      "T4_recall10": 0.0249
     }
    }
   },
   "t3_only": false
  },
  {
   "track": "O",
   "tag": "go23vec",
   "name": "GO annotation vector at the 2023 cutoff (non-IEA)",
   "short": "GO annotation vector (2023)",
   "version": "v1.1",
   "in_v0": false,
   "modality": "annotation vector",
   "cls": "annot",
   "text": null,
   "train_text": null,
   "encoder": null,
   "text_label": "Sequence embedding concatenated with the gene's own 2023 GO annotations (reference baseline)",
   "gen_share": null,
   "n_genes": 19256,
   "meta": {
    "training": "binary vector of the gene's GO annotations at the 2023-01-01 cutoff (non-IEA; 4,894 terms); a T3 reference, not a representation of the gene",
    "date": "2023",
    "signal": "the annotations themselves",
    "t3": "yes",
    "t3_why": "T3-only reference baseline (annotation-access rule)",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": 0,
      "T4_n": 0,
      "T3": 0.4928,
      "T3_n": 137,
      "T3_novel": 0.3504,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": -1.45
      },
      "T1_bins": {
       "zero": null,
       "1-10": null,
       "11-100": null,
       "101-1000": null,
       ">1000": null
      }
     },
     "all": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.6027,
      "T3_n": 347,
      "T3_novel": 0.3991,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 20.54
      }
     }
    },
    "mlp": {
     "0-10": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": 0,
      "T4_n": 0,
      "T3": 0.8892,
      "T3_n": 137,
      "T3_novel": 0.86,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 77.83
      },
      "T1_bins": {
       "zero": null,
       "1-10": null,
       "11-100": null,
       "101-1000": null,
       ">1000": null
      }
     },
     "all": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.9105,
      "T3_n": 347,
      "T3_novel": 0.8601,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 82.1
      }
     }
    }
   },
   "t3_only": true
  },
  {
   "track": "O",
   "tag": "fusion_p16b_go23",
   "name": "GB.Protein-16B ⊕ GO annotation vector at the cutoff",
   "short": "GB.Protein-16B ⊕ GO vector",
   "version": "v1.1",
   "in_v0": false,
   "modality": "mixture",
   "cls": "biotext",
   "text": "mixture",
   "train_text": null,
   "encoder": null,
   "text_label": "Sequence embedding concatenated with the gene's own 2023 GO annotations (reference baseline)",
   "gen_share": 0.0,
   "n_genes": 19133,
   "meta": {
    "training": "concatenation of GB.Protein-16B and the 2023 GO annotation vector",
    "date": "mixed",
    "signal": "the annotations themselves",
    "t3": "yes",
    "t3_why": "T3-only reference",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work (round 14)"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": 0,
      "T4_n": 0,
      "T3": 0.54,
      "T3_n": 137,
      "T3_novel": 0.4142,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 7.99
      },
      "T1_bins": {
       "zero": null,
       "1-10": null,
       "11-100": null,
       "101-1000": null,
       ">1000": null
      }
     },
     "all": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.633,
      "T3_n": 347,
      "T3_novel": 0.4453,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 26.59
      }
     }
    },
    "mlp": {
     "0-10": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": 0,
      "T4_n": 0,
      "T3": 0.8978,
      "T3_n": 137,
      "T3_novel": 0.8675,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 79.56
      },
      "T1_bins": {
       "zero": null,
       "1-10": null,
       "11-100": null,
       "101-1000": null,
       ">1000": null
      }
     },
     "all": {
      "index": null,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": null,
      "T2": null,
      "T2_labels": 0,
      "T4": null,
      "T1_n": null,
      "T4_n": null,
      "T3": 0.918,
      "T3_n": 347,
      "T3_novel": 0.8685,
      "skills": {
       "T1": null,
       "T2": null,
       "T4": null,
       "T3": 83.6
      }
     }
    }
   },
   "t3_only": true
  },
  {
   "track": "F",
   "tag": "t23l__qwen8b",
   "name": "Qwen3-Embedding-8B",
   "short": "Qwen3-Embedding-8B",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-8B",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "Qwen3 language model tuned for embedding on web-scale text pairs",
    "date": "2025",
    "signal": "LLM memory",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-8B",
    "cite": "Zhang et al., 2025"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 34.19,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8325,
      "T2": 0.6242,
      "T2_labels": 10,
      "T4": 0.5561,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 66.49,
       "T2": 24.85,
       "T4": 11.22,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9349,
       "1-10": 0.819,
       "11-100": 0.8551,
       "101-1000": 0.8591,
       ">1000": 0.8427
      },
      "S": 0.0779,
      "S_ci": [
       0.0719,
       0.0841
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8969
     },
     "all": {
      "index": 40.7,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.849,
      "T2": 0.7085,
      "T2_labels": 11,
      "T4": 0.5531,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 69.79,
       "T2": 41.69,
       "T4": 10.61,
       "T3": null
      },
      "S": 0.0779,
      "S_ci": [
       0.0719,
       0.0841
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8969
     }
    },
    "mlp": {
     "0-10": {
      "index": 43.95,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9245,
      "T2": 0.6786,
      "T2_labels": 10,
      "T4": 0.5561,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.91,
       "T2": 35.72,
       "T4": 11.22,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9721,
       "1-10": 0.9183,
       "11-100": 0.9231,
       "101-1000": 0.9117,
       ">1000": 0.8812
      },
      "S": 0.0334,
      "S_ci": [
       0.0301,
       0.0366
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9517
     },
     "all": {
      "index": 48.64,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9202,
      "T2": 0.7562,
      "T2_labels": 11,
      "T4": 0.5531,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.05,
       "T2": 51.25,
       "T4": 10.61,
       "T3": null
      },
      "S": 0.0334,
      "S_ci": [
       0.0301,
       0.0366
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9517
     }
    }
   }
  },
  {
   "track": "F",
   "tag": "t23l__qwen06b",
   "name": "Qwen3-Embedding-0.6B",
   "short": "Qwen3-Embedding-0.6B",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "Qwen3-Embedding-0.6B",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "Qwen3 language model tuned for embedding on web-scale text pairs",
    "date": "2025",
    "signal": "LLM memory",
    "source": "https://huggingface.co/Qwen/Qwen3-Embedding-0.6B",
    "cite": "Zhang et al., 2025"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 32.93,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8218,
      "T2": 0.6206,
      "T2_labels": 10,
      "T4": 0.5515,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 64.36,
       "T2": 24.11,
       "T4": 10.3,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9122,
       "1-10": 0.8099,
       "11-100": 0.8441,
       "101-1000": 0.8479,
       ">1000": 0.8382
      },
      "S": 0.0875,
      "S_ci": [
       0.0817,
       0.0931
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8974
     },
     "all": {
      "index": 38.71,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8382,
      "T2": 0.698,
      "T2_labels": 11,
      "T4": 0.5445,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 67.63,
       "T2": 39.6,
       "T4": 8.91,
       "T3": null
      },
      "S": 0.0875,
      "S_ci": [
       0.0817,
       0.0931
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8974
     }
    },
    "mlp": {
     "0-10": {
      "index": 41.01,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9199,
      "T2": 0.6437,
      "T2_labels": 10,
      "T4": 0.5515,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.98,
       "T2": 28.75,
       "T4": 10.3,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.97,
       "1-10": 0.9133,
       "11-100": 0.9142,
       "101-1000": 0.9008,
       ">1000": 0.873
      },
      "S": 0.0379,
      "S_ci": [
       0.0351,
       0.0408
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9512
     },
     "all": {
      "index": 44.31,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9122,
      "T2": 0.7079,
      "T2_labels": 11,
      "T4": 0.5445,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 82.44,
       "T2": 41.58,
       "T4": 8.91,
       "T3": null
      },
      "S": 0.0379,
      "S_ci": [
       0.0351,
       0.0408
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9512
     }
    }
   }
  },
  {
   "track": "F",
   "tag": "t23l__mpnet",
   "name": "all-mpnet-base-v2",
   "short": "all-mpnet-base-v2",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "all-mpnet-base-v2",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "MPNet fine-tuned on one billion sentence pairs",
    "date": "2021 (base model 2020)",
    "signal": "general text",
    "source": "https://huggingface.co/sentence-transformers/all-mpnet-base-v2",
    "cite": "Song et al., 2020; Reimers and Gurevych, 2019"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 33.34,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8196,
      "T2": 0.6258,
      "T2_labels": 10,
      "T4": 0.5548,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 63.91,
       "T2": 25.16,
       "T4": 10.95,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9112,
       "1-10": 0.8075,
       "11-100": 0.8405,
       "101-1000": 0.8469,
       ">1000": 0.828
      },
      "S": 0.0884,
      "S_ci": [
       0.0822,
       0.0944
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8959
     },
     "all": {
      "index": 39.06,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8353,
      "T2": 0.6998,
      "T2_labels": 11,
      "T4": 0.5508,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 67.06,
       "T2": 39.95,
       "T4": 10.15,
       "T3": null
      },
      "S": 0.0884,
      "S_ci": [
       0.0822,
       0.0944
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8959
     }
    },
    "mlp": {
     "0-10": {
      "index": 41.02,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9207,
      "T2": 0.6398,
      "T2_labels": 10,
      "T4": 0.5548,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.14,
       "T2": 27.96,
       "T4": 10.95,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9664,
       "1-10": 0.9146,
       "11-100": 0.9181,
       "101-1000": 0.906,
       ">1000": 0.8785
      },
      "S": 0.0382,
      "S_ci": [
       0.0354,
       0.0411
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9529
     },
     "all": {
      "index": 44.95,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9155,
      "T2": 0.708,
      "T2_labels": 11,
      "T4": 0.5508,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.1,
       "T2": 41.6,
       "T4": 10.15,
       "T3": null
      },
      "S": 0.0382,
      "S_ci": [
       0.0354,
       0.0411
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9529
     }
    }
   }
  },
  {
   "track": "F",
   "tag": "t23l__bge",
   "name": "bge-large-en-v1.5",
   "short": "bge-large-en-v1.5",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "bge-large-en-v1.5",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "BERT-large trained on web text pairs",
    "date": "Sep 2023",
    "signal": "general text",
    "source": "https://huggingface.co/BAAI/bge-large-en-v1.5",
    "cite": "Xiao et al., 2023"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 32.31,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8208,
      "T2": 0.6113,
      "T2_labels": 10,
      "T4": 0.5525,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 64.17,
       "T2": 22.26,
       "T4": 10.49,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9202,
       "1-10": 0.8077,
       "11-100": 0.8455,
       "101-1000": 0.8506,
       ">1000": 0.8344
      },
      "S": 0.0921,
      "S_ci": [
       0.0859,
       0.0983
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8999
     },
     "all": {
      "index": 39.11,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.839,
      "T2": 0.697,
      "T2_labels": 11,
      "T4": 0.5506,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 67.8,
       "T2": 39.4,
       "T4": 10.12,
       "T3": null
      },
      "S": 0.0921,
      "S_ci": [
       0.0859,
       0.0983
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8999
     }
    },
    "mlp": {
     "0-10": {
      "index": 41.0,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9196,
      "T2": 0.6429,
      "T2_labels": 10,
      "T4": 0.5525,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.93,
       "T2": 28.58,
       "T4": 10.49,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9677,
       "1-10": 0.9133,
       "11-100": 0.9177,
       "101-1000": 0.9059,
       ">1000": 0.8812
      },
      "S": 0.0402,
      "S_ci": [
       0.0373,
       0.0431
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9535
     },
     "all": {
      "index": 45.51,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.915,
      "T2": 0.717,
      "T2_labels": 11,
      "T4": 0.5506,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 83.0,
       "T2": 43.41,
       "T4": 10.12,
       "T3": null
      },
      "S": 0.0402,
      "S_ci": [
       0.0373,
       0.0431
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9535
     }
    }
   }
  },
  {
   "track": "F",
   "tag": "t23l__pubmedbert",
   "name": "pubmedbert-base-embeddings",
   "short": "pubmedbert-base-embeddings",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "pubmedbert-base-embeddings",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "PubMedBERT (PubMed abstracts and full text) fine-tuned for sentence embeddings",
    "date": "2023 (base model 2020)",
    "signal": "biomedical literature",
    "source": "https://huggingface.co/NeuML/pubmedbert-base-embeddings",
    "cite": "Gu et al., 2021"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 34.64,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.822,
      "T2": 0.6409,
      "T2_labels": 10,
      "T4": 0.5567,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 64.39,
       "T2": 28.18,
       "T4": 11.33,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9118,
       "1-10": 0.8101,
       "11-100": 0.8522,
       "101-1000": 0.8656,
       ">1000": 0.8573
      },
      "S": 0.0896,
      "S_ci": [
       0.0831,
       0.0961
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8998
     },
     "all": {
      "index": 41.37,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8461,
      "T2": 0.7235,
      "T2_labels": 11,
      "T4": 0.551,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 69.23,
       "T2": 44.69,
       "T4": 10.2,
       "T3": null
      },
      "S": 0.0896,
      "S_ci": [
       0.0831,
       0.0961
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8998
     }
    },
    "mlp": {
     "0-10": {
      "index": 41.95,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9235,
      "T2": 0.649,
      "T2_labels": 10,
      "T4": 0.5567,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.71,
       "T2": 29.8,
       "T4": 11.33,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9707,
       "1-10": 0.9173,
       "11-100": 0.9237,
       "101-1000": 0.9153,
       ">1000": 0.8941
      },
      "S": 0.0404,
      "S_ci": [
       0.0376,
       0.0433
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9578
     },
     "all": {
      "index": 46.19,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9213,
      "T2": 0.7207,
      "T2_labels": 11,
      "T4": 0.551,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.25,
       "T2": 44.13,
       "T4": 10.2,
       "T3": null
      },
      "S": 0.0404,
      "S_ci": [
       0.0376,
       0.0433
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.9578
     }
    }
   }
  },
  {
   "track": "F",
   "tag": "t23l__tfidf",
   "name": "TF-IDF (1,024-d SVD)",
   "short": "TF-IDF (1,024-d SVD)",
   "version": "v1",
   "in_v0": true,
   "modality": "text embedder",
   "cls": "clean",
   "text": "leakfree",
   "train_text": null,
   "encoder": "TF-IDF (1,024-d SVD)",
   "text_label": "Scored on corpus L (GenePT's 2023 text, generated summaries removed)",
   "gen_share": 0.0,
   "n_genes": 19256,
   "meta": {
    "training": "fitted on the two corpora themselves (1,024-d SVD)",
    "date": "—",
    "signal": "none",
    "source": "https://github.com/hwang595/gene-embedding-exposure",
    "cite": "this work"
   },
   "probes": {
    "linear": {
     "0-10": {
      "index": 32.47,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.83,
      "T2": 0.6125,
      "T2_labels": 10,
      "T4": 0.5445,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 66.01,
       "T2": 22.5,
       "T4": 8.9,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9027,
       "1-10": 0.8204,
       "11-100": 0.8162,
       "101-1000": 0.8107,
       ">1000": 0.7946
      },
      "S": 0.0429,
      "S_ci": [
       0.0382,
       0.0483
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8634
     },
     "all": {
      "index": 34.99,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.8186,
      "T2": 0.674,
      "T2_labels": 11,
      "T4": 0.5323,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 63.72,
       "T2": 34.81,
       "T4": 6.45,
       "T3": null
      },
      "S": 0.0429,
      "S_ci": [
       0.0382,
       0.0483
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.8634
     }
    },
    "mlp": {
     "0-10": {
      "index": 39.33,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9202,
      "T2": 0.6252,
      "T2_labels": 10,
      "T4": 0.5445,
      "T1_n": 4878,
      "T4_n": 6077,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 84.04,
       "T2": 25.04,
       "T4": 8.9,
       "T3": null
      },
      "T1_bins": {
       "zero": 0.9594,
       "1-10": 0.9151,
       "11-100": 0.9017,
       "101-1000": 0.8782,
       ">1000": 0.8456
      },
      "S": 0.021,
      "S_ci": [
       0.0188,
       0.0233
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.936
     },
     "all": {
      "index": 39.44,
      "ci": null,
      "rank": null,
      "rank_ci": null,
      "index4": null,
      "T1": 0.9011,
      "T2": 0.6583,
      "T2_labels": 11,
      "T4": 0.5323,
      "T1_n": null,
      "T4_n": null,
      "T3": null,
      "T3_n": null,
      "T3_novel": null,
      "skills": {
       "T1": 80.22,
       "T2": 31.66,
       "T4": 6.45,
       "T3": null
      },
      "S": 0.021,
      "S_ci": [
       0.0188,
       0.0233
      ],
      "S_n": 4310,
      "T1_asfound_1-10": 0.936
     }
    }
   }
  }
 ],
 "sources": {
  "round4/results/r11/bench_v1.json": "909d84c92617e431cd201cec037d0c4735e8167e383602a00b9f50f6eb0c15eb",
  "round4/results/r14/rows_v11.json": "c2ffb367be03d8ece88ff4626b19310a4e2d163ad84a787a0e24351409574cbc",
  "round4/results/r14/bench_r14.json": "7fa5c54007ab6aed811a64c7ca091d5b0ddd24b3ab7e5a5a64a11535af5dc3a9",
  "round4/results/r14/t4_recall.json": "6efd43f51b7ea56b116048876c613a3cf47349bae528cb1b0256496861216751",
  "round4/results/r14/coverage.json": "fcc82c2131e1d8224b4a81b3eda5835b5dd6d68ab031037e4ccbcde068efd280",
  "round4/release/provenance_human_protein_coding.tsv": "f38c62cf601948176c88f5382ee1043d0e2d00f73c3d48a4f8b2ae007faeb6a6"
 }
}